HsaINT0079513 @ hg19
Intron Retention
Gene
ENSG00000128322 | IGLL1
Description
immunoglobulin lambda-like polypeptide 1 [Source:HGNC Symbol;Acc:5870]
Coordinates
chr22:23917154-23922495:-
Coord C1 exon
chr22:23922172-23922495
Coord A exon
chr22:23917270-23922171
Coord C2 exon
chr22:23917154-23917269
Length
4902 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTGCCCCTCACTCCCAGCAGGTT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GGCCACATGGACTGGGGTGCAATGGGACAGCTGCTGCCAGCGAGAGGGACCAGGGCACCACTCTCTAGGGAGCCCACACTGCAAGTCAGGCCACAAGGACCTCTGACCCTGAGGGCCGATGAGGCCAGGGACAGGCCAGGGGGGCCTTGAGGCCCCTGGTGAGCCAGGCCCCAACCTCAGGCAGCGCTGGCCCCTGCTGCTGCTGGGTCTGGCCGTGGTAACCCATGGCCTGCTGCGCCCAACAGCTGCATCGCAGAGCAGGGCCCTGGGCCCTGGAGCCCCTGGAGGAAGCAGCCGGTCCAGCCTGAGGAGCCGGTGGGGCAG
Seq A exon
GTAAGGGGTGAGAGATTCCAGGGGATGTGGGGGTCTGGGTGGCAGAGGCGGGAAAGGATGACCAAGGGGAGACGAGCCAGAGGGGTGAGGAGGAAGGTTAATCCCTGGAGGGGAGCCACAGACACTGACTTTAACTAAAGTGTCAAGATTTTGTCCATCTTTGAATTAATTTTTATTGCTTAATGTCATATTAAAATATTATTTATCTTGATTCCTGAGATTTCTTCCCCCACTTACATTTGGCACCAAGGCCAATGTCTCCCTCACCTCCCCCTAGTCCTTGGGGTAGGGCAGGACTGGAGGCAGGGGCAGGACGTCCACAGGAGTGGTGGCCGCTATCCCTGAAGGATGCCCAGGCCTCTCCCTCCTCCTCCTCCCACTCCTCCTCCCCCCCCTCCTCTTTTCCCCTTGGCCTATGTCACCTGTCCACTCCCACCCTCACTGGGCAGGGGCCACTCCCTGGAGCTCCAGCTAAGGTGTGAGGGGCCTTTCCTGGAGTCCCTGGGTCACTAGACCTCAGCCAGCATCGCCTCCTGAAACCAGCCCCTAGGAGACACAAGCTTATCCAGGGTGCAAGTGCCTCCAAAGAAGAAGCCCAGGAGAGGCTCTAGGGAGGCCACAACTCCCTGTGTGACCTCAGCCATTGCCACCACTCTGCGTGTGGTGGGAGGTCCCCAGACAAAGCACCAAGCATCGGGGTCCATTTATGAGCATTTGGGACACAACAGCCTGTTCACTGGTGCATGTTATACCCACAGGCGATAATCATTTCAGGGGCAGAACCTCCCTCTCGGTGGCCCCATAGGCAGGTCCTGCTGTGATCCCCTTTGTGCAGACGGGGATAGAGCCCGGAGAGGTGAGGTGACCCGTCCGAGTCACTCAGCTCATGGGCACAGATTCTAAGGCCCAAGCTATCCCCTCTAGCTCTCCCCTGTCCCATCCTCTAAGCTGATCGAGCGGACACGTGCATCTCTGGGACCTGAGTTTCCCTTTTTCTCTCTTTTTTTTCTTTTTCAAATAAAGTTTCACAGAGTTTCACTCTTGTCGCCCAGTCTGGAGTGCAATGGCGAGATCTTGGCTCATTGAAACCTCCGTCTCCCAGGTTCAAGACATTCTCCTGCCTCAGCTTCCGGAGTAGCTGGGATTACAGGCATCTGCCACCACACCTGGCTAATTTTGTGTATTTTTTTTTAGTAAAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGACACCACACCGGGCCTGAGTTTCCCCTTCTGCAATCTGAGGGGCCCTGACTGGTGAGGGCCTTCAGCGTCCCACCCACCCAGAGGATGCTGGGGTGGCTGTGGTGAGAGCTCCAGCAGTGGCAGCCGACCTGACCCACACCAGGAGCCCGGCCATGGAGGCGGGGTCAGCATGGTGGCAGGCCGGGACCGGGTGTCAGTGTCCTGCACGGACTTCTGAGCAAGGAGTCCCCATCAGGGTCAGGCTCTGTGCTGGGGCTGAGGTCCCAGAGGATCTAGATTTGCCCCAATTCAAGTCCACAAGGAGCGGGGGCCGGGTGAGGAGACAGCCACATGCAGGGTGATGCCTACAGAACAGAGACTGGGATGGGGAAGGCCCGAGGGGTCTCCACAAGGGACGGGTGACAGGTGGAGGGAGACACAGATAATAAAAAATGGTATTATGTTGGGGGGCTATTAATGTAAGTTTTTATATTAGAATCTTTAGAAATCTTATAGAAATACTATGGGCCGGGTGCTGTGTCTCATGCCTGTAATCCCAGCACTTTAGGACGCCAAGATGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGCAAAACTCCGTCTCTACTAAAAATACAAAAACTAGCTGGGCGTGGTGGCGCGAGCCTATAGTCCCAGCTACTCGGGAGGGGAGGCAGGAGAATCGCTTGAATCAGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCACCGCTGCACTCCAGCCTGGACGACAGAACGAGACTCCCACTCAAAAAAAAAAAAAGGTATTATGCTGGGGGGGATATGAATATGAGTTTTTATAATCTTTAGAAATACTATGGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCACAACTTTGGGAGGCTGAGGCGGGATTGTTTGAGCCCAGGAGTTTGAGATCAGCCTGAGCAACATAGCAAGACCCCATTTCTACAAAACATATAAAAACTAGCTAGTCATGGTGGCACTTGCCTGTGGTCCCAGCTACTTAGGAGGCTGGTGAGAGGATTGCTTAAGCCTCGGAGGTTGAGGATGCAGTAAGCTGAGATCCCACCACTGCACTCCAGCCTGGGTGACAGAAGGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGACTGATTATTCCTGTAGAATTCTGGTAAATATCTCCTATCAAATAAATGACTTTTCTATTCATAGCTTATTAAAAGATATTTTCATTGTTTTTAAGAAATAGGTTGTGTATCACTTTTTATATTTAGTTGTAAATTTATTTGTTTTATTTATTTTTTTAGAGATGGGGGTCTCACTATGTTGCCTGGGCTGGCCTCCAACTGCTGGGCTCAAGCAATATCCCTGCCTCAGCGTCCCCAGTAGCTGGGACTACAAGCATGCGCTACCACACCGGCATAATTTTTTGTAGAGATGAGGTTTCGCCATGTTGCCTGGGCTGGTCTTGAACCCCTGGGCTCAAGCCATCCACCCGCCTCGGCCTCCTAAAGTGCTGAGATTACAGACGTGAGCCACCCTACCTAGCCTGTACTATTTTTAATAGGTCTTAATAGGTTTTGAATGTTAATTATTTTTAAATTAATTTCAAAAATCTTCTACAACATGGATGAAACCTGAAGACATTATACTTAGTGAAATAAGCCAGACACAAAAGGACAAATGTCATTTGAATCCACTTCTATGAGGTACCTAGAATAGGCAAATTCACTTGGACAAAAAGTAGATTTGAGGTTAGCAGGGTGAGGGGGAGGGAAGAATGGGGGACTGTAGTTAACGGGTTTAGAGTTTCTGTTTGGGAAGATGAAAGAGTTCTGGAGATGGATGGTGGTGAAGGTTGCCCAACGGTGTGAATGTACTTAGTGCCACGGAGCTGTACGTTTAAAAATAGTTAAAGTGGAAATATTGATGCTATGTATAAAAATGGAGCGGGGTGTGGTGGCTCACACCTATAATCCCAGCACTTTGAGAGGCCAAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACAAACATGGAGAAACACCGTCTCTACTGAAAATACAAAAAATTAGCCAAGTGTGCTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGTGGAGGTTGCGGTGAGCCAAGGTGGCACCATTGCACTCCAGCCTGGGCGACAAGGGTGAAATTCCATTTCAAAAAAATAAAAGGAAATGGGACTGTACATAGCAGGAGAGAGAGGGAGAGATCAATATGACACTTCTTTTTTTTTTTTTTTTTTTTTGGGACAGTCTTGCTCTGTTGCCAGGCTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAGAATGTCTAGATGCAGTAGCTAAGTTCGCAGAAGCCATTTCAGTGTGGGAGGCGAGGTGACTGAGTCCAGGGACTCCAGGTTTCTGGCTGAGGGGTTGAGACCGCCCATGGTCATTGTGATGAGATGAAGACAGAAAATGAGCTGGGCTGGGGGAAGGTGGTCATCTCCTCTGGACGTGATTAGTTTGAGGCTCCTGTTGGGTAGCCCACTGGGCAAGGTCAGTAGGCAATTGAGGAGCTGAGAGGGTTTGGAGCTGGGATAGACTCCAGCCTCACCATGTGGGCAATAGTGGGGGTCACAGAGTGTGAAAATGGCTAAGAAAGAGGTCTGGGTGGGGTCTGGGGAGTCAGCAGCCAGGCATGGGCCATGGAGAAACAGATGCCAGGGGAAGAGGAAAGGGGAGTCTCAGACCCCAAGGGGAAAAGAGTCACTGGAAAGAGGGGCCAGCCCTGTGTCGCATCCAGCGGAGACACCAGGTACAGCAGAAGGACCTTGGACATGACCATGAGGAGGGCCTTGTTGACCATGGCCTGGGAGAGATGGGGGTGAGAGCCTGGGGGACCACACCATGTCCCCAGCACACAGTGCCTGGTAGACAGGATGGATTTATGGATGGACGGACAGGTAGATGGATGGACGAATGGACAGATGATAGATGGATGCAAAGACAGATGAATAGATGGACAGATGCATAGATGGACAGATGGACAGATGGATGGACGGACGGATGGAATGAATGATCAGAAAAGGCTTCATGAACAAAGTGAGACTGAGCTGCATCTCCATGGGTAGATATAAAAGCAGAGGACTCTCCTCTTGAGTCAGGAATGACCCAATGTCCTGGTCCAGGGAGGAAGTCAGCCTCCTTGACTGGGGACACTTGTGGCAGATTTCAGAGGCCCTTAAAATGAGGCCAAGTGAGGTGGACAGGTCCGAGCCAGCTGAGGACTCCTCAGCCACACGGCACAGCTGCCTGAGGGGATGTGTCACTCAGGGAGTTGCTGGGACCTACTGGGCCCAGCGTTGCCATCAGCACCAACAGTTTCAGAGAGGGGGACACACGCTGGGGCAGCACCTGCCTCAGAGAAGGGACAGGCACAGAGACACTACTGGGGGACACTACTGGGACACTGGCCACCCCCCTACCCTGTGCCTGGGTCACAGCCTACACACTGCAGCCCTGTGCCCCTCACTCCCAGCAG
Seq C2 exon
GTTCCTGCTCCAGCGCGGCTCCTGGACTGGCCCCAGGTGCTGGCCCCGGGGGTTTCAATCCAAGCATAACTCAGTGACGCATGTGTTTGGCAGCGGGACCCAGCTCACCGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128322-IGLL1:NM_020070:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)