MmuINT0080908 @ mm10
Intron Retention
Gene
ENSMUSG00000075370 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:MGI Symbol;Acc:MGI:96529]
Coordinates
chr16:16862429-16863817:-
Coord C1 exon
chr16:16863696-16863817
Coord A exon
chr16:16862545-16863695
Coord C2 exon
chr16:16862429-16862544
Length
1151 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGTCTGACTCACCCAACAGGCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
TTGGGTCTAGTGGATGGTGTCCACCACATACTTTCCCCAAGCTCAGCAGAAAGGAGCAGAGCTGTGGGCCCTGGAGCTTCAGTGGGAAGCAACAGGCCTAGCCTATGGGCCCTTCCCGGCAG
Seq A exon
GTAAGAGACTTGCTTTTTGGGGAAGGTACGCGTGTAGGTCCACGGACTAGAGGCTAGAATGAGTGACTGGGAAGGAAGGTGGCTATTGAGGCCATGGGTGTGAGAAGGAAGGATCTGCCTAAGAGGAGGGGGCTGTGCAAATGCTAGCTTAAACTTGGTACCTCGATCATTGCAAGGCCAGTGTTCTACCAATGAACCACATCCATAGCCCACCTCCATTTTCCATTTATTTTGAGAAGAGGTCTTGCTAGGTTTCCCAGGCTGATCTTACTCTCTGTAGCCTATGCAAGATTTGAACGTCCTATAGCTTTCCTAGATCCTTCCTCCTTCCTAAGTCCTCTTTAGTAGCTAGAATTAAGACTGTGGTGGCGCGTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTGTGTGTGTGTGTGTGTGTGTCATGGTCCTAGTTCATTTAGAATTAAATGTGTGTGTTTATCGTAGTCAGGTAGTTGCAGTTCTAGAAGTTTATTCTTAGGTAATTATTAAAACATCCATTAAATATTGTGAGGGTGTCTTGGGTTGGGAGGAGGAGACACCATGGCCATGGAGATCACCCAGTCAAGAAGACCTTGCCTGTAAAGCATGAGGACTTAATTCAGACTCTCAGCAACCATTCATCTACTATCAAGATGTTTTTACTCAGATAAATAGAAAAAAAAAAAAAAAAGGTTTGGTGTGGTGGCACACCTTTTATATCCCAGCAGTTGGGAGGCAGAGGCAGGCAGATCTTTGTGAGTTTGAGGCCAGCCTGGTCTACATAGTAGTCTCATGATAGAAATAAAAACAAAAGAATCCTTGCAATATAGTGTGCATGGGTCCTGGGAGGAAGCATAGGGCCAGTAGGAACTGATGCACACACGCATGTATGCACACACGCACAAGCACATATGCACACACAAATATTCACCAGAGATTCCTGGTTCCACCACACCCACCAGAGAAGATATACCACCCAGGAATTTCTGAGAATCTGCTGGGCCTGATATTGCCATCAACACTGAAAAAATTCAGAGATGGAAGTAAGAGATGGATAGATGGACTTGTCGGGATACTGGCTGCTCATCTATTTTCTGCCAAGGACATAGTTTATTTCCTGAAGTTCTGTGTCTGACTCACCCAACAG
Seq C2 exon
GCTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTCGCCCCATAGGCTTCCATCTAAGCCCCAGTTTTGGTATGTCTTTGGTGGTGGGACCCAGCTCACAATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075370:ENSMUST00000124890:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTCTAGTGGATGGTGTC
R:
CTAGGATTGTGAGCTGGGTCC
Band lengths:
238-1389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types