HsaINT1016285 @ hg38
Intron Retention
Gene
ENSG00000128322 | IGLL1
Description
immunoglobulin lambda like polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:5870]
Coordinates
chr22:23574967-23580308:-
Coord C1 exon
chr22:23579985-23580308
Coord A exon
chr22:23575083-23579984
Coord C2 exon
chr22:23574967-23575082
Length
4902 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTGCCCCTCACTCCCAGCAGGTT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GGCCACATGGACTGGGGTGCAATGGGACAGCTGCTGCCAGCGAGAGGGACCAGGGCACCACTCTCTAGGGAGCCCACACTGCAAGTCAGGCCACAAGGACCTCTGACCCTGAGGGCCGATGAGGCCAGGGACAGGCCAGGGGGGCCTTGAGGCCCCTGGTGAGCCAGGCCCCAACCTCAGGCAGCGCTGGCCCCTGCTGCTGCTGGGTCTGGCCGTGGTAACCCATGGCCTGCTGCGCCCAACAGCTGCATCGCAGAGCAGGGCCCTGGGCCCTGGAGCCCCTGGAGGAAGCAGCCGGTCCAGCCTGAGGAGCCGGTGGGGCAG
Seq A exon
GTAAGGGGTGAGAGATTCCAGGGGATGTGGGGGTCTGGGTGGCAGAGGCGGGAAAGGATGACCAAGGGGAGACGAGCCAGAGGGGTGAGGAGGAAGGTTAATCCCTGGAGGGGAGCCACAGACACTGACTTTAACTAAAGTGTCAAGATTTTGTCCATCTTTGAATTAATTTTTATTGCTTAATGTCATATTAAAATATTATTTATCTTGATTCCTGAGATTTCTTCCCCCACTTACATTTGGCACCAAGGCCAATGTCTCCCTCACCTCCCCCTAGTCCTTGGGGTAGGGCAGGACTGGAGGCAGGGGCAGGACGTCCACAGGAGTGGTGGCCGCTATCCCTGAAGGATGCCCAGGCCTCTCCCTCCTCCTCCTCCCACTCCTCCTCCCCCCCCTCCTCTTTTCCCCTTGGCCTATGTCACCTGTCCACTCCCACCCTCACTGGGCAGGGGCCACTCCCTGGAGCTCCAGCTAAGGTGTGAGGGGCCTTTCCTGGAGTCCCTGGGTCACTAGACCTCAGCCAGCATCGCCTCCTGAAACCAGCCCCTAGGAGACACAAGCTTATCCAGGGTGCAAGTGCCTCCAAAGAAGAAGCCCAGGAGAGGCTCTAGGGAGGCCACAACTCCCTGTGTGACCTCAGCCATTGCCACCACTCTGCGTGTGGTGGGAGGTCCCCAGACAAAGCACCAAGCATCGGGGTCCATTTATGAGCATTTGGGACACAACAGCCTGTTCACTGGTGCATGTTATACCCACAGGCGATAATCATTTCAGGGGCAGAACCTCCCTCTCGGTGGCCCCATAGGCAGGTCCTGCTGTGATCCCCTTTGTGCAGACGGGGATAGAGCCCGGAGAGGTGAGGTGACCCGTCCGAGTCACTCAGCTCATGGGCACAGATTCTAAGGCCCAAGCTATCCCCTCTAGCTCTCCCCTGTCCCATCCTCTAAGCTGATCGAGCGGACACGTGCATCTCTGGGACCTGAGTTTCCCTTTTTCTCTCTTTTTTTTCTTTTTCAAATAAAGTTTCACAGAGTTTCACTCTTGTCGCCCAGTCTGGAGTGCAATGGCGAGATCTTGGCTCATTGAAACCTCCGTCTCCCAGGTTCAAGACATTCTCCTGCCTCAGCTTCCGGAGTAGCTGGGATTACAGGCATCTGCCACCACACCTGGCTAATTTTGTGTATTTTTTTTTAGTAAAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGACACCACACCGGGCCTGAGTTTCCCCTTCTGCAATCTGAGGGGCCCTGACTGGTGAGGGCCTTCAGCGTCCCACCCACCCAGAGGATGCTGGGGTGGCTGTGGTGAGAGCTCCAGCAGTGGCAGCCGACCTGACCCACACCAGGAGCCCGGCCATGGAGGCGGGGTCAGCATGGTGGCAGGCCGGGACCGGGTGTCAGTGTCCTGCACGGACTTCTGAGCAAGGAGTCCCCATCAGGGTCAGGCTCTGTGCTGGGGCTGAGGTCCCAGAGGATCTAGATTTGCCCCAATTCAAGTCCACAAGGAGCGGGGGCCGGGTGAGGAGACAGCCACATGCAGGGTGATGCCTACAGAACAGAGACTGGGATGGGGAAGGCCCGAGGGGTCTCCACAAGGGACGGGTGACAGGTGGAGGGAGACACAGATAATAAAAAATGGTATTATGTTGGGGGGCTATTAATGTAAGTTTTTATATTAGAATCTTTAGAAATCTTATAGAAATACTATGGGCCGGGTGCTGTGTCTCATGCCTGTAATCCCAGCACTTTAGGACGCCAAGATGGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGCAAAACTCCGTCTCTACTAAAAATACAAAAACTAGCTGGGCGTGGTGGCGCGAGCCTATAGTCCCAGCTACTCGGGAGGGGAGGCAGGAGAATCGCTTGAATCAGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCACCGCTGCACTCCAGCCTGGACGACAGAACGAGACTCCCACTCAAAAAAAAAAAAAGGTATTATGCTGGGGGGGATATGAATATGAGTTTTTATAATCTTTAGAAATACTATGGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCACAACTTTGGGAGGCTGAGGCGGGATTGTTTGAGCCCAGGAGTTTGAGATCAGCCTGAGCAACATAGCAAGACCCCATTTCTACAAAACATATAAAAACTAGCTAGTCATGGTGGCACTTGCCTGTGGTCCCAGCTACTTAGGAGGCTGGTGAGAGGATTGCTTAAGCCTCGGAGGTTGAGGATGCAGTAAGCTGAGATCCCACCACTGCACTCCAGCCTGGGTGACAGAAGGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGACTGATTATTCCTGTAGAATTCTGGTAAATATCTCCTATCAAATAAATGACTTTTCTATTCATAGCTTATTAAAAGATATTTTCATTGTTTTTAAGAAATAGGTTGTGTATCACTTTTTATATTTAGTTGTAAATTTATTTGTTTTATTTATTTTTTTAGAGATGGGGGTCTCACTATGTTGCCTGGGCTGGCCTCCAACTGCTGGGCTCAAGCAATATCCCTGCCTCAGCGTCCCCAGTAGCTGGGACTACAAGCATGCGCTACCACACCGGCATAATTTTTTGTAGAGATGAGGTTTCGCCATGTTGCCTGGGCTGGTCTTGAACCCCTGGGCTCAAGCCATCCACCCGCCTCGGCCTCCTAAAGTGCTGAGATTACAGACGTGAGCCACCCTACCTAGCCTGTACTATTTTTAATAGGTCTTAATAGGTTTTGAATGTTAATTATTTTTAAATTAATTTCAAAAATCTTCTACAACATGGATGAAACCTGAAGACATTATACTTAGTGAAATAAGCCAGACACAAAAGGACAAATGTCATTTGAATCCACTTCTATGAGGTACCTAGAATAGGCAAATTCACTTGGACAAAAAGTAGATTTGAGGTTAGCAGGGTGAGGGGGAGGGAAGAATGGGGGACTGTAGTTAACGGGTTTAGAGTTTCTGTTTGGGAAGATGAAAGAGTTCTGGAGATGGATGGTGGTGAAGGTTGCCCAACGGTGTGAATGTACTTAGTGCCACGGAGCTGTACGTTTAAAAATAGTTAAAGTGGAAATATTGATGCTATGTATAAAAATGGAGCGGGGTGTGGTGGCTCACACCTATAATCCCAGCACTTTGAGAGGCCAAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACAAACATGGAGAAACACCGTCTCTACTGAAAATACAAAAAATTAGCCAAGTGTGCTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGTGGAGGTTGCGGTGAGCCAAGGTGGCACCATTGCACTCCAGCCTGGGCGACAAGGGTGAAATTCCATTTCAAAAAAATAAAAGGAAATGGGACTGTACATAGCAGGAGAGAGAGGGAGAGATCAATATGACACTTCTTTTTTTTTTTTTTTTTTTTTGGGACAGTCTTGCTCTGTTGCCAGGCTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAGAATGTCTAGATGCAGTAGCTAAGTTCGCAGAAGCCATTTCAGTGTGGGAGGCGAGGTGACTGAGTCCAGGGACTCCAGGTTTCTGGCTGAGGGGTTGAGACCGCCCATGGTCATTGTGATGAGATGAAGACAGAAAATGAGCTGGGCTGGGGGAAGGTGGTCATCTCCTCTGGACGTGATTAGTTTGAGGCTCCTGTTGGGTAGCCCACTGGGCAAGGTCAGTAGGCAATTGAGGAGCTGAGAGGGTTTGGAGCTGGGATAGACTCCAGCCTCACCATGTGGGCAATAGTGGGGGTCACAGAGTGTGAAAATGGCTAAGAAAGAGGTCTGGGTGGGGTCTGGGGAGTCAGCAGCCAGGCATGGGCCATGGAGAAACAGATGCCAGGGGAAGAGGAAAGGGGAGTCTCAGACCCCAAGGGGAAAAGAGTCACTGGAAAGAGGGGCCAGCCCTGTGTCGCATCCAGCGGAGACACCAGGTACAGCAGAAGGACCTTGGACATGACCATGAGGAGGGCCTTGTTGACCATGGCCTGGGAGAGATGGGGGTGAGAGCCTGGGGGACCACACCATGTCCCCAGCACACAGTGCCTGGTAGACAGGATGGATTTATGGATGGACGGACAGGTAGATGGATGGACGAATGGACAGATGATAGATGGATGCAAAGACAGATGAATAGATGGACAGATGCATAGATGGACAGATGGACAGATGGATGGACGGACGGATGGAATGAATGATCAGAAAAGGCTTCATGAACAAAGTGAGACTGAGCTGCATCTCCATGGGTAGATATAAAAGCAGAGGACTCTCCTCTTGAGTCAGGAATGACCCAATGTCCTGGTCCAGGGAGGAAGTCAGCCTCCTTGACTGGGGACACTTGTGGCAGATTTCAGAGGCCCTTAAAATGAGGCCAAGTGAGGTGGACAGGTCCGAGCCAGCTGAGGACTCCTCAGCCACACGGCACAGCTGCCTGAGGGGATGTGTCACTCAGGGAGTTGCTGGGACCTACTGGGCCCAGCGTTGCCATCAGCACCAACAGTTTCAGAGAGGGGGACACACGCTGGGGCAGCACCTGCCTCAGAGAAGGGACAGGCACAGAGACACTACTGGGGGACACTACTGGGACACTGGCCACCCCCCTACCCTGTGCCTGGGTCACAGCCTACACACTGCAGCCCTGTGCCCCTCACTCCCAGCAG
Seq C2 exon
GTTCCTGCTCCAGCGCGGCTCCTGGACTGGCCCCAGGTGCTGGCCCCGGGGGTTTCAATCCAAGCATAACTCAGTGACGCATGTGTTTGGCAGCGGGACCCAGCTCACCGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128322:ENST00000330377:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains