MmuINT0080908 @ mm9
Intron Retention
Gene
ENSMUSG00000075370 | Igll1
Description
immunoglobulin lambda-like polypeptide 1 [Source:MGI Symbol;Acc:MGI:96529]
Coordinates
chr16:16862522-16864078:-
Coord C1 exon
chr16:16863789-16864078
Coord A exon
chr16:16862638-16863788
Coord C2 exon
chr16:16862522-16862637
Length
1151 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGTCTGACTCACCCAACAGGCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
CTGGAATAGCTTTTGGCCACCAGAGGAGGAACAATCCTTTTGCCGGGAGATCTACACTGCAAGTGAGGCTAGAGTTGACTTTGGACTTGAGGGTCAATGAAGCTCAGAGTAGGACAGACTCTGGGCACTATCCCCAGGCAGTGTGAAGTTCTCCTCCTGCTGCTGCTGTTGGGTCTAGTGGATGGTGTCCACCACATACTTTCCCCAAGCTCAGCAGAAAGGAGCAGAGCTGTGGGCCCTGGAGCTTCAGTGGGAAGCAACAGGCCTAGCCTATGGGCCCTTCCCGGCAG
Seq A exon
GTAAGAGACTTGCTTTTTGGGGAAGGTACGCGTGTAGGTCCACGGACTAGAGGCTAGAATGAGTGACTGGGAAGGAAGGTGGCTATTGAGGCCATGGGTGTGAGAAGGAAGGATCTGCCTAAGAGGAGGGGGCTGTGCAAATGCTAGCTTAAACTTGGTACCTCGATCATTGCAAGGCCAGTGTTCTACCAATGAACCACATCCATAGCCCACCTCCATTTTCCATTTATTTTGAGAAGAGGTCTTGCTAGGTTTCCCAGGCTGATCTTACTCTCTGTAGCCTATGCAAGATTTGAACGTCCTATAGCTTTCCTAGATCCTTCCTCCTTCCTAAGTCCTCTTTAGTAGCTAGAATTAAGACTGTGGTGGCGCGTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTGTGTGTGTGTGTGTGTGTGTCATGGTCCTAGTTCATTTAGAATTAAATGTGTGTGTTTATCGTAGTCAGGTAGTTGCAGTTCTAGAAGTTTATTCTTAGGTAATTATTAAAACATCCATTAAATATTGTGAGGGTGTCTTGGGTTGGGAGGAGGAGACACCATGGCCATGGAGATCACCCAGTCAAGAAGACCTTGCCTGTAAAGCATGAGGACTTAATTCAGACTCTCAGCAACCATTCATCTACTATCAAGATGTTTTTACTCAGATAAATAGAAAAAAAAAAAAAAAAGGTTTGGTGTGGTGGCACACCTTTTATATCCCAGCAGTTGGGAGGCAGAGGCAGGCAGATCTTTGTGAGTTTGAGGCCAGCCTGGTCTACATAGTAGTCTCATGATAGAAATAAAAACAAAAGAATCCTTGCAATATAGTGTGCATGGGTCCTGGGAGGAAGCATAGGGCCAGTAGGAACTGATGCACACACGCATGTATGCACACACGCACAAGCACATATGCACACACAAATATTCACCAGAGATTCCTGGTTCCACCACACCCACCAGAGAAGATATACCACCCAGGAATTTCTGAGAATCTGCTGGGCCTGATATTGCCATCAACACTGAAAAAATTCAGAGATGGAAGTAAGAGATGGATAGATGGACTTGTCGGGATACTGGCTGCTCATCTATTTTCTGCCAAGGACATAGTTTATTTCCTGAAGTTCTGTGTCTGACTCACCCAACAG
Seq C2 exon
GCTCCTGTTCCAGATCATCCCACGGGGAGCAGGTCCCAGGTGCTCGCCCCATAGGCTTCCATCTAAGCCCCAGTTTTGGTATGTCTTTGGTGGTGGGACCCAGCTCACAATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075370-Igll1:NM_001190325:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAATCCTTTTGCCGGGA
R:
ACCAAAACTGGGGCTTAGATGG
Band lengths:
343-1494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: