RnoINT0076093 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3363530-3364726:+
Coord C1 exon
chr7:3363530-3363649
Coord A exon
chr7:3363650-3364518
Coord C2 exon
chr7:3364519-3364726
Length
869 bp
Sequences
Splice sites
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
3' ss Seq
TAAGCAATTCCCTCACCTAGGTT
3' ss Score
5.14
Exon sequences
Seq C1 exon
GGTTGCTTTTTGTGACCAACATTGATAGCTCAGACCCCGACCAGCTGGTGTATAAAACTTTGGACCCCGCTGACCGGCTCACAGGACCAGCCGGAGACTTGACCTTGAATAGCTATTTAG
Seq A exon
GTTTGTAAGCTCCTGCGTCCTGGGCCCTGGGGTTTGGCCCTGGCCTTCCCACTTTCCCTCTAGGGAGTGTCCTTTCCTTTCCCGCCCTCCCCTAAAACATGCCCAGGGAAACACATATTGGGCACAAACTGCAGAATAGAATTAGGCCCATTAATAGGCCTGAGAAGAATAGGTCTCAAAGGTGATAGTCTTGGGGGCTGTAAGCCAAGGGGCTCCAAGGAGAAAGACCCAGGTGGAGTGAGAGGACCAGGGTCAACCCTGCTTGGAAGGACAGCATTGACCTCTAGGGAAGTTCCTCTGAGGGGTGGATGGTGGACTTAGGTTGGAGAAAGCTCTAGTCTTTCAAGTAATCCCCTCATCGCTGTTTATACCCTACTCTGCATATCAACAAGGAAGATAGGAGGTCCAGGAGACATTTGGGTGAAGCAAACTCTTCCTTGACCCTTGGTCTTCCTCCCATATGTGTAAAGATTGCCTTCCCCTCGGCAGGGTGGGAAAGAGGGGGTGGGGAGATGCACTGGATGTCAATGGACCTTCTGGGTGTGTAGGATGGGGGGAGTCTCCCTGTCCTTCAGTTCCCCAGCTTGGGCATGAATGGTTGGCTCTCATTGCCCAGCCCCTCTCACCAAGTCACCAAGGCTCCTCTCTCAGTGCCTTTCTCTCTGCTCCATGACACCTTTGTGTCATATCCTGTGTCTCTGACCAGGAGGGCTACAAGGATTTCCAGGCCCTGGCTGGGGAGGAGGAATAGTGTAGCCACAGTGTGGAGAGGTGGAGTGGGGAGAGGCAACTTTTCCTTCTGGAGCCTGGGGCTCACCAGGGTCTTGAGTTTTGGAGAGTCACTCACAGTAAGCAATTCCCTCACCTAG
Seq C2 exon
GTTTCTCCATTGATTCTGGGAAGGGTCTCATGCGCTCAGAAGAGCTGAGTTTTGTGGCAGGGGCCCCACGTGCCAACCACAAAGGGGCTGTGGTCATTCTGCGCAAGGATAGTGCCAGCCGCCTGATTCCTGAGGTTGTGCTGTCTGGGGAGCGCCTGACCTCTGGCTTTGGCTACTCCCTGGCTGTGACTGACCTCAACAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF135171=VCBS=PU(6.8=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCTTTTTGTGACCAACA
R:
CCATCACTGTTGAGGTCAGTCA
Band lengths:
328-1197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]