RnoINT0076441 @ rn6
Intron Retention
Gene
ENSRNOG00000012208 | Itgb7
Description
integrin subunit beta 7 [Source:RGD Symbol;Acc:2929]
Coordinates
chr7:143828210-143830644:-
Coord C1 exon
chr7:143830474-143830644
Coord A exon
chr7:143828452-143830473
Coord C2 exon
chr7:143828210-143828451
Length
2022 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
TCATTGCTTTCTGCTTGCAGGTT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGGAGCCCCAGAAATTCCGGGTCCGCTTCCTCCGAGCTGCGGGATATCCCGTGGACCTGTACTACCTTATGGACCTGAGCTATTCAATGAAGGACGACTTGGAACGTGTGCGACAGCTCGGGCAAGCCCTGCTGCTCCGGCTGCGGGAGGTCACCCATTCTGTGCGCATAG
Seq A exon
GTGAGCATGTGCTACCCAGACCCTGCCAGCCCTTGTCACTACCTTTAGCTTCCACCACCGCCTTAGAATCTCCCAGTATTGGATCTTGACATCTCTCCCAAGAGATACTCATCTAGGTCTAAGCTCGAGGGCCTTTAGGATTGACCGTTGGAGGATCCCATGCTGTACACAAAGGCCAGCTGAGGCGCAGAATCTAAGAGACTGTTCACACAGACAGCCGCCCACCTGGACACTGCCCTTATGCTACCTACCATCTCAACACAGTGTTTCTGGATAATCTAGATGCGACGTTCCTGTTCCTCATTCTGTAATGATTTTTCCCCACATGGTTCAAAGGCGCCCCCTTGCCAGGTGGTGGTAATGCACACCTTTAATCCCAGCATTCAGGAGGCAGAGGCAGACAGAGCTCTGAGTTTGAGCACAGCTTGGTCTACAGAGCCACTTCCAGGACAGGCGACATAGAGAGACCTTGAATCAAAATAAACAAGCCCCCTCCAAAGCACCTGCTCTGTGACACCTGCTGCTTCTACATTCTTTTCTTTCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTTTAAAGATCTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCGGGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCTCTTCCTTTCTTTCTTTCTGCAACATTTTCAGCCTTTTATTTATTTTTTAATTGGATTTTTAAAAAATTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACAGCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGACAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCTTAATTGGATTTTTTTTTTTCCGGGGCTGGGGACCGAACCCAGGACCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCCAAATCCCCAACCCCCTTAATTGGATTTTTAAACTTACATTTCAAATGTTATTTCCTTTCCCGGTTTCCCGTCCATAAACCCCTATTCCATTCCCCTCCCTCTTCTTCTATGAGGGTGTTCCCCCACTCAACCACCCACCCCTTCCCACCTCCCTGCCCTGACATTCCCCTACACTGGGGGTGGGGTGGGGTCCAGCCTCGGCAGGACCAAGGGCTTGTCCTCCCATTAGTGCCCTATAAGGCCATCCTCTGCTACATGTGCAGCTGGAGCCGTGAGTCTGTCCTCGTGTACTCTTTGGATGGTGGTTTAGTCCCTGAGAGCTCTGGTTGGTTGGCATTGTTCTTTTTTTTTCTTTTTTAAGATTTATTTATTATATATAAGTATACTGTAGCTGTCTTCAGACACACCAGAAGAGGACATCAGATCCCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGGCATTGTTGTTCTTATGGGGATTCAAGCTTTTTCAGCTCCTTCAATCCTTTCTCTAATGCTTCTACATTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCATGCTTCTACATTCTTGACCCTGGTAGCCTCAACCTCTAGGAAGCCTGGCTGCTGCTGTTGGGTCCTCCTCTTCATCTCCCCCATTCCCATGTTCTTGAGCCACATTTTCGTCCTCGCCGGTACCAGGTCCCTGTCATCTAGGTGTAACCTCCTGTCTGAGTGTTTAGCAGGGACTCTTACATCCTATCGACACCCTGTGACCTCTGGCATGGCCTCATTGCTTTCTGCTTGCAG
Seq C2 exon
GTTTTGGCTCCTTTGTGGACAAAACGGTGCTACCCTTTGTAAGCACAGTGCCCTCCAAGCTTAACCACCCATGCCCCAGCCGGTTGGAGCGCTGTCAGGCACCCTTCAGCTATCACCACGTGTTGCCCCTCACCAGGGATGCTCAAGCCTTCGAGAGAGAGGTGGGACGCCAGAACGTCTCTGGCAACCTGGACTCACCCGAAGGAGGCTTTGATGCCATTTTGCAGGCTGCTCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012208:ENSRNOT00000016642:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(13.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]