RnoINT0077743 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140894714-140895777:+
Coord C1 exon
chr7:140894714-140894848
Coord A exon
chr7:140894849-140895643
Coord C2 exon
chr7:140895644-140895777
Length
795 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GACCCTCTCTTTTGTTGCAGGTG
3' ss Score
12.53
Exon sequences
Seq C1 exon
GGCTTCCATTCTGGTGTCTCCTGGATGTGATACCTATAAAAAACGAGAAGGGGGAGGTGGCCCTCTTCCTGGTCTCTCACAAGGACATCAGTGAGACCAAGAACCGAGGAGGCCCTGACAACTGGAAGGAGAGAG
Seq A exon
GTGGGTGCTCTATCGCCCTGATTTAGAAGTAGAGGCTTGGGCTTGGGCTCGGGCTCAGGCAGGTCTGTAACACTCAGGTTATAGGCACCCACCCTTCTGGTTCTCACTGAGCTCCACTCTGTCTGAGCTGCTCTGGGTTTAGTCCCCAGATGGGAATCTCGTCCTAATAGGCTAGTTGAAACAAAGTTGCGGTTGTCAAAGAAACTCCACCTGCGCCAGGAAGCCCCCCTTCCCACTAATGAGGGAGAGCGTACTCACCTGACTCCTTCTCGAACAGCCTGCCTGATGGAGGGCAGGGATGGGGTGGGGGAAGCCCAGGGTGAAGCCCCTTCCTGGGGCTGGACATTAGACACAGTGTCCAATATCTCATCGCTGTCTGGAGATGCCAGGGAGTACAGTCCATGCCACAGCTCTGCCCTCCCTCAGCCCAGGATTAGCTGGTGTCAGTCTTCAACGCGGGCTCCTCTGAACTTCTATTGACGGCATCCATCCCTCTGGCTCTGCATCTTGAGACCATCTTAGAGATTTCTTAGGCCTTTCTCCACTGACTCCTTTCCTTGTGTGGCTGGATCCAGACCTTCTCCAGGCAGCTGATCCTGGAACTAGGGTACTGAGTACCCCTAGGACTGCACAGCTCTGATTGACAAGTGACCTGGTGACACGAGGAATGCCTAACCCCTCACTCTGAAAAGACAAAGGGGGTCAACGAGCCACATCATTTCACAGACTAGCAACTAGTGTCCTATGCCCAGGATTCTACAGCTTACTGTCACAGGACCCTCTCTTTTGTTGCAG
Seq C2 exon
GTGGTGGCCGACGCAGATATGGTCGGGCAGGATCCAAAGGCTTTAATGCCAATCGGAGGCGCAGCCGGGCGGTTCTCTACCACCTCTCTGGTCACCTGCAGAAACAACCCAAGGGCAAGCACAAACTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=67.4),PF051168=S6PP=PD(38.2=73.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCATTCTGGTGTCTCC
R:
TGAGTTTGTGCTTGCCCTTGG
Band lengths:
264-1059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]