RnoINT0078091 @ rn6
Intron Retention
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57241245-57243919:+
Coord C1 exon
chr13:57241245-57241293
Coord A exon
chr13:57241294-57243859
Coord C2 exon
chr13:57243860-57243919
Length
2566 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATG
5' ss Score
2.37
3' ss Seq
AGGTCACAATTTCATTTTAGGTC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTCTCACATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGTTTACAG
Seq A exon
GTTATGTACAAGTTTACTTATTCCTGTATTTCATTGTTCATTTGTATTTCACATAGGAACCCTATAGATAAGTATTCTGTTGATGTTCAAGCTGTGCTTCCCTTATGTCATCCCTTAATGCACCTCTCAGGCTGGCATCTTGACTTACTCCTCCTTGTTTTCCCATTCTGCCTTGTAAGACTTTCCCTGCAATCTGGATTAAACTTCTAAGAGCATTGGAAGTTAAAAAAATGAAGCCATAAAAAGCCAGCAAATCAAAGTCCTAACACTGCATGTTTCCCAAACTACTTCACACGACTCATGTATCCTTTTAAAGAGCAGCCAAGCACCACAATTGTGGGTACTTTTTCCCCTAGAAGAATGTGGTACAATCTAAACAAATGAATGTATAAACTTAGAAACCACACAAACAACTGTGTAAACGAAAAAGAAAGATAATTTGTTGTGGGTCATCAGAGTTGCAATAAAGAAAACCATATACAAGAGAAAACCAAGTCTGAATTATAGTCCCGTGTTGTCTAGCCTTAATTCTTGTTTTTATTAGACTTAGTAAACAGCATTGTTTGTATAAGATTCTGTCACGGTCCCTTATATTTATGGTCTATCCGTCATTTTTTACTTTCTGATCTTTCTTAAAAGTGCTAATTAAATGGAAGATAGGGTTACTAACATAAAGAAGACATGGAGGTCGCAGGAAAACTATGGTTTATTGCCCATGTTCTATTTGTAGGACAGTGATATCTGGATCAGATGTTGAATTGCTTTAAAATGCCATGCTGGTTCTCTCCCCATTATTTATGATAGTGAATGATTTTGAAAGTGCAGTGTTATAATAGCTACAAATAAATCAGATGCACACTTCATTTTAGTTTAAATAAATTTAATTATATCAGTGGTTCTCAATCTGTGGGTCCTGACCCCTTTGGCAAACCTTTTTCTCCAAAAGTATTTATAGTATGATTCAAAACAATAGCAAAAGTACAGTTTTGAAATAGCAACTAAAATTACTTTATGGTTGGGGATCGCCACAACATAATGAACTGTATTATTGGGTTGAGAACCACTGGTTTACATTGACTTCTATTGCTATGTCAATTAGTATAGAAATAATTAGTTCCAAATACCTTTCCAAATATTAGGCGTTCATTGAAATATACTCTTATGGTATCCCATGCAATGCCTATAGCATCCTTTAATTAAAACTAAAATAAATTGAAATTCTGTAAAGTCATACATTCACTTTTATTAAAATTTATAATTGCTTTTATTTTGTATACTATTCTTTGTGGTATGTAAAATAGCATGTTAGAATTTTCTACAGATCATGTAACAATATACTATTAGAAAACACTACAGATAATCATAATAGAAGATTTGTGGAGAAAATAAAAATATTTCTAGCTTCCTATTGTAGGAATGACTAGTTGCATGTATCCATGGATAGATTTTACCCGGATTAGTAGTCATACATCTATTTTTATTGTGTTACTATTTACTGTTCACTTCAATTTTAAAGTTTCATTTTAGTAAGAAACAATATTAAGACTTGTAAAAAAATTACTTTTTTGATTATGAAGTATCTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCGAGTGTTATTCCCTTTCCCGATTATAAAGTATCTTAAACTTTAATTATACGATAAATATAGTTGACACCCAAATCATCTCCTGTTCATGATTGCATATTTTTTCTCATCTCCATTTTAAACTGATGAGGAGATGGGATANNNNNNNNNNNNNNANNNNNNNNNNNNAGAAAGTATGAGATCTTGAGTTCAATTTCTCAGCATCACAAAAGCAAAACACTGTAAGTAATTCACTTACTTAATAAAAGGCACATCCTTGAAGAATAATTCATGAATTCCTCTGCTTATTTTTCTACTCCAGTGTTTTCTGACAGTAATTGTAAAGATTTCATAGGCTGCAGAGCACATAGAGAAAGGAGCATGCTCAAATAACACAAAACTAGCATTGCCAACCATGCAAACACAACTGGTCATGGCTTGTTATGTAATCCTGAAGCACCCTGTATCGTTGAAATGGCCATGTATAGAAAATTCATGGATGTTAGCATCCCATATTGTCCTAGGTGAAATAAAATGATTCAGTCTACTCAGTTTGAACTTTGCATTTGGTTTTCTGAAGGGAAACACTTATTTCAGCAGTGACGTTGTTAATAAAAGCCAATGTGTGTAATCCTTATCTTCATGTATCTTGCCCTCTTTAGTCAGTATGAATACTGAATTTCCAGTTTTATACTTAGGACACTGAGCAAAAATTATTCATTAAGAATATGTGAAATTATGAAAACTAAATTGTAATAGAGATGGCAGTAAAATATGGTGTTTATCCCATCACGGCAAACTAAAGTTCATGTACTATGTATCACTTTATTATACATGTGTATTATATGTACATGTCTACATTTTTATATACATGTATCCATTTTCACATTTGTGTGTACACTTACTATCACATAATGAAAGCATATTTTACTTACCTTGCATTTTCTCATAGGTCACAATTTCATTTTAG
Seq C2 exon
GTCTCGGTGGCATTGATAAGTCTATTTGAAACAATACTCCTTGGATATCTCAGTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312:ENSRNOT00000017884:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]