RnoINT0078151 @ rn6
Intron Retention
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56763778-56764348:-
Coord C1 exon
chr4:56764206-56764348
Coord A exon
chr4:56763951-56764205
Coord C2 exon
chr4:56763778-56763950
Length
255 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GTGTTTGGGTCTGAGGCCAGGAT
3' ss Score
-0.02
Exon sequences
Seq C1 exon
ACCCTACCGGATCATGCTCGCACCAGGGTCGCTGGGTGGCCTCTGGAGAACACTGGATAGTGGACGCCTGCACCAGCTGTGCCTGTGTGGCTGGTACTGTGCACTGCCAGAGCCAGCGCTGCAGGAACCTCTCATGTGGCCGG
Seq A exon
GTGAGTGCTTTGGTTCAAGGTGGTAGGACCAAGGCACACAAGCCACTGCTATCCCAGAGTGATGAGAAGGGGCTTGGGCTTCTCTTGCCTTCCATGAACCAGGAAGCCAGGGCTGATGCTGTTCCTGGAGTGACCACCAGGGGGTGAACCTGGGTTTAAGGGATCAGAGAGACCACAGGGGCGAGGGGTGGGGTGAAGTGCTGAGACTTGACGGGAGAGTGTCCTGTGACTGACTGTGTTTGGGTCTGAGGCCAG
Seq C2 exon
GATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCCCCGCTGTTTGCCCGGGCTGGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGATGGCCGCCTGCTGCACTTCCAGGGCAGCTGCAGCTACGTGCTGGCCAAGGACTGCCACAGCGAGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855:ENSRNOT00000050795:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(72.4=87.5)
A:
NA
C2:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGGATCATGCTCGCAC
R:
CTCGCTGTGGCAGTCCTTG
Band lengths:
305-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]