HsaINT0084791 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128879913-128880528:-
Coord C1 exon
chr7:128880386-128880528
Coord A exon
chr7:128880086-128880385
Coord C2 exon
chr7:128879913-128880085
Length
300 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GTGTCTGGGGCTGAGTGCAGGAC
3' ss Score
0.4
Exon sequences
Seq C1 exon
CTCCCACCCAGTCCTGCGTGCACCAGGGCCGTGAGGTGGCCTCTGGAGAGCGCTGGACTGTGGACACCTGCACCAGCTGCTCCTGCATGGCGGGCACCGTGCGTTGCCAGAGCCAGCGCTGCTCACCGCTCTCGTGTGGCCCC
Seq A exon
GTGAGTGCCGCAATCTAAAATGGTGGGGAGGGTCAGGGTGGGGGCACATGGTACCGCCATCCTGGTGTGACCAGGCATCAGAGAGGGAGGCTGGGCTCCTGCCGCCAGCTGGGAGCTGGGGACAGTGCTGTTCCCAGTGCGACCACGATGTGGTGCCCTGACCTCACTCACAGGGAGCCTGGGAGCCAGAGTCCTGGAGATCCCTGGAGACTCCTGGGAGATGCTTGGTTTTCTGGGAGGGTCTGCGAGAGGCATGGCGGGGAGGGCGGTGTGTCTGACAGTGTCTGGGGCTGAGTGCAG
Seq C2 exon
GACAAGGCCCCTGCCCTGAGTCCTGGCAGCTGCTGCCCCCGCTGCCTGCCTCGGCCCGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGACGGCCGCCTGCTGCACTTCCAGGGCAGTTGCAGCTATGTGCTGGCCAAGGACTGCCACAGCGGGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(72.4=87.5)
A:
NA
C2:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACCCAGTCCTGCG
R:
CTGAAGTCCCCGCTGTGG
Band lengths:
316-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development