HsaEX0033145 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128879718-128880923:-
Coord C1 exon
chr7:128880619-128880923
Coord A exon
chr7:128880386-128880528
Coord C2 exon
chr7:128879718-128879829
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCCAGCTCCTATCCCTTCAGCTC
3' ss Score
7.47
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGCAGATATGGGGTCTTTAAGGGTCAGGGGCATCCCTGCACCGGGGCATGGAGCCGAAGGCTGGATTTCATTCCCCTCTTGAACTGTGAAGAATGTATTGTGGGAGGGGCAGGCAGAAGTCCATGCCCAGAGGCCCCCAGAAGCATGAGGCTGGGGACTCCGGCCCTGCAGAAAACCCCAGAACAATGATGTCTGTCCTCAGCGGGGCCATGTGGAGTGCCACCTCGAGGAGTGCCAGGCCCTCTCCTGCCCCCATGGCTGGGCGAAGGTGCCCCAGGCTGACAGCTGCTGTGAGCGATGCCAAG
Seq A exon
CTCCCACCCAGTCCTGCGTGCACCAGGGCCGTGAGGTGGCCTCTGGAGAGCGCTGGACTGTGGACACCTGCACCAGCTGCTCCTGCATGGCGGGCACCGTGCGTTGCCAGAGCCAGCGCTGCTCACCGCTCTCGTGTGGCCCC
Seq C2 exon
TGTGCACGTGACCAATGATGACCGGGGCCGGAGCGGTGTGGCCTGGACCCAGGAGGTGGCGGTGCTGCTGGGAGACATGGCCGTGCGGCTGCTGCAGGACGGGGCAGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX4-4/6=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(51.6=91.4)
A:
PF0009313=VWC=PU(72.4=87.5)
C2:
PF0009420=VWD=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTATTGTGGGAGGGGCA
R:
CCCCGGTCATCATTGGTCAC
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development