RnoEX6012972 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56763778-56766068:-
Coord C1 exon
chr4:56765969-56766068
Coord A exon
chr4:56764206-56764348
Coord C2 exon
chr4:56763778-56763950
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCATTTCTCCTCAGACC
3' ss Score
10.03
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GATCTGACATGGCTCTGTACTCACCGGGCCTGTCCTGCGCTCAGCTGTCCCCTGTGGGAGCACCACACAACCCCTGGGAGCTGCTGCCCCGTGTGTAAAG
Seq A exon
ACCCTACCGGATCATGCTCGCACCAGGGTCGCTGGGTGGCCTCTGGAGAACACTGGATAGTGGACGCCTGCACCAGCTGTGCCTGTGTGGCTGGTACTGTGCACTGCCAGAGCCAGCGCTGCAGGAACCTCTCATGTGGCCGG
Seq C2 exon
GATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCCCCGCTGTTTGCCCGGGCTGGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGATGGCCGCCTGCTGCACTTCCAGGGCAGCTGCAGCTACGTGCTGGCCAAGGACTGCCACAGCGAGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'39-44,'39-42,42-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(63.3=91.2)
A:
PF0009313=VWC=PU(72.4=87.5)
C2:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGCTCTGTACTCACCG
R:
AGTCCTTGGCCAGCACGTAG
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]