DreEX6064107 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6953385-6960414:-
Coord C1 exon
chr18:6960326-6960414
Coord A exon
chr18:6958659-6958928
Coord C2 exon
chr18:6953385-6953557
Length
270 bp
Sequences
Splice sites
3' ss Seq
AATGTATCTGTGTGTTTCAGAAA
3' ss Score
9.05
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
TGTGTGTATTAGAGGGCAGCAACACCCGTGTGCCAGATGGCCATAGATGGACAGACAAGGAGAATGAGTGCACAACCTGCATCTGTAAT
Seq A exon
AAAGGGCACATTGAGTGTGACCTGCAGGAGTGTGCTCCGCTCCAGTGTCCGGATGGATCCGTTAAAGTCAAGAACCCGGGGAAGTGCTGTCAAGAGTGCACAGAGGTGGTAGATGTGGTGTACATATACCCTAGTGCAGAGTGTGTGTACGAGGGACAGATATATAGAGACAGTGACCAATGGGAAGTGGACGAGTGTACGACCTGCACCTGTGTGAATGGAGATGTGCACTGCCAAACCCAGAGATGCCCAACGCTCACATGTGCCTCG
Seq C2 exon
GATGAAACGCCAGCTCTGGTTCCTGGGATGTGTTGTCCTCACTGTATTCCTCACCCTGCCACCTGCGTTGTCTTTGGAGATCCTCACTACCGAACATTTGACGGAAAGATGGTGCATTTCCAGGGCACCTGCACATACGTTCTGGCTCAGGACTGTGAGGGCGGAGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'46-45,'46-43,47-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.2=93.3)
A:
PF0009313=VWC=PD(51.6=35.6),PF0009313=VWC=PU(72.4=46.7)
C2:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTATTAGAGGGCAGCA
R:
GAAGTCTCCGCCCTCACAGTC
Band lengths:
260-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]