BtaEX0018904 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93658716-93659445:-
Coord C1 exon
chr4:93659264-93659445
Coord A exon
chr4:93658956-93659058
Coord C2 exon
chr4:93658716-93658858
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCAATGACGTTTGTCCTCAGCGG
3' ss Score
5.3
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
ACTGTGTGGTGGAGGCTGCGGGCCGGACAGCGGCGGATGGAGAGAGCTGGAGGGACCCCAGCAACGCCTGTGTCACGTGCACCTGCCGTGTGAGCTGGGGGAGGGGGGTGGGGGGTGGAGAACCTTACAGGCAAAAGTGAAGGGCCTCAGGACACTGGACCAGAGAACATGGGGTCTTCAAG
Seq A exon
CGGGGCCATGTGGAGTGCCGCCTGGAGGAGTGCCAGGCGCTCACCTGCCCTCGCGGCTGGGCGAAGGTGCGGGAGGCTGGCAGGTGCTGTGAGAGGTGCCAAG
Seq C2 exon
CCCCCGCCCCGTCGTGCGCGCACCAGGGCCGGCAGGTGGCCTCCGGGGAGCGCTGGGACGTGGACGCCTGCACCAACTGCTCCTGCATGGCAGGCACCGTGCGCTGCCAGAGCCAGCGCTGCCCGCCGCTCTCCTGTGGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'48-53,'48-52,49-53
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.2=93.3)
A:
PF0009313=VWC=PD(51.6=91.4)
C2:
PF0009313=VWC=PU(72.4=87.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGGTGGAGGCTGC
R:
GTTGGTGCAGGCGTCCAC
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development