MmuEX6003386 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29435003-29437280:-
Coord C1 exon
chr6:29437181-29437280
Coord A exon
chr6:29435418-29435560
Coord C2 exon
chr6:29435003-29435175
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTCGTTTCTCCTCAGACC
3' ss Score
11.13
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GATCTGACGTGGCTCTGTACTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGTGTAAAG
Seq A exon
ACCCTACCCAGTCATGCATGCATCAGGGTCGCTGGGTGGCCTCTGGAGAACAGTGGGCAGTGGATGCCTGCACCAGCTGCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGTAGCCGG
Seq C2 exon
GATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCTGTTTGCCCCGGCCGGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTGCAGCTACGTGCTGGCCAAGGACTGCCACGGCGAGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'35-41,'35-40,36-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(62.0=91.2)
A:
PF0009313=VWC=PU(72.4=87.5)
C2:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(87.8=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACGTGGCTCTGTACTCA
R:
AGTCCTTGGCCAGCACGTAG
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: