RnoINT0078737 @ rn6
Intron Retention
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10021283-10021637:+
Coord C1 exon
chr9:10021283-10021483
Coord A exon
chr9:10021484-10021559
Coord C2 exon
chr9:10021560-10021637
Length
76 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CACACTACCCTGTTCCTCAGGCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
ACAAAGCTGCAGCAGCAGCTACAGACCCTAATGCTGCCTGGGCCGCCTACTACTCCCACTACTACCAGCAACCCCCAGGCCCCGTGCCAGGCCCTGCCCCAGCCCCTGCAGCCCCACCTGCGCAAGGGGAGCCCCCCCAGCCTCCACCTACTGGCCAATCAGACTATACCAAGGCTTGGGAAGAGTATTACAAAAAAATTG
Seq A exon
GTAAGTTCAGTGCTAGGGAGCAGTGGGGTATCCTACACAGGGTCCAGCTTCACTGACACACTACCCTGTTCCTCAG
Seq C2 exon
GCCAGCAGCCCCAGCAGCCTGGGGCGCCCCCACAGCAGGATTACACCAAGGCCTGGGAGGAGTACTACAAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628:ENSRNOT00000072033:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(77.8=30.9)
A:
NA
C2:
PF090055=DUF1897=PD(18.5=18.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCAACCCCCAGGC
R:
GTAATCCTGCTGTGGGGGC
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]