RnoINT0080225 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50164590-50165976:+
Coord C1 exon
chr16:50164590-50164699
Coord A exon
chr16:50164700-50165816
Coord C2 exon
chr16:50165817-50165976
Length
1117 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATT
5' ss Score
7.06
3' ss Seq
GTTCACCACTGAGTTCACAGGTT
3' ss Score
0.6
Exon sequences
Seq C1 exon
GAAGAGTTGCCTGCTGAAGCGCAGTTCAAGTGGAACGCCCACCAGTATAAAGCCAGTGGACAACCTGGTGTCTGGATTCTCACTGAAGTCCTGTGCTCTCTCAGAGATCG
Seq A exon
GTAATTAGATGACGATTATTCCTCTGTGTCTGTGATGTCCTAAGGAAGGGTTCCCAGAAACATCCACATGCTGTTCCCCGGGACCCAGGAATATGATGCCTTTTTATAGATGTGATTACGTGGAAATAGTTTGCAATCAGAGTTATTTGGGATTACCAGAATATGTGCCTATCCACTCTCAGGGGTTCTTAGATGATAAAGCGGGTAACAGAGAGGTCAGTGTCAGAGGTAGATAGACTTGAAAGGTGGAACAAGAGTCCGAAAGCCAAAGGGGTACCAGTGGTCTGTAGACATTGAAAAGGACATAGAACAGAGGAACAGAAGCAAGCCAACCTTTGACTGGCACCCAGGAAGACTTGCTTTGGCCTTCCAGCCTCTAGGAAAGGTGATAAATTTCTGTTGCTGTAACCTCTAGTTTTACTATAATATGCCTACAACAACATCATTAGAAGAGGAAGCTCCACCATAAAGAAAACCACAAGATCATTCTGTGGTATCCGTATCCAGAGAAATATGCACATTGTCGTGAATCAACCAAGCCCTGTAACTTCACACACAGAGGTAGCGCTAAATGAATTACCCGGACAGTTGCCTTCAAATTTAGGACACCAAGGTGTCAGTGGTGAGATTTACTGAGACCAGTCCACTTATAGTAAATAGTACCAATACTGAATGCTGGCCCTACACCAGGCCCTGTGTTAGGTTTCCGAATTCTGTGGTATGACCTCTGTCTGAAAGACTGAGAAGTCAGAAGCAACATAGCTCTTTCCCTATTTGTGTTTTCTTTTCTCTATGTGTCCCCACCAGGCTGTGCCATTCAGATGGCTTAAATATATTAACTATTTAATTTTAATATTCCCCTTTTCTAGTTTTTGGAAACTTGTCTATAGGAGATAGGGCTCTTTATTCAACAGTGTTCCCTTTTGTATACTGCGCTTATCTTAGACTGCACCCTGCAGCTATAGCCAGATGCCAGAGGACTGGGAAACAGGCAATTTAAAACTCAGGATGCTGACTGCTGCAAATACCAATTGTCATAATCACCTTAGTTTCTATGTTGAAAAGCAAGCAAACTCCACATCGTGTCACTGAGAAATGTTCACCACTGAGTTCACAG
Seq C2 exon
GTTGCCCCATGGATATTTTCCAGCACTTTGCCTTTGCAGACCTGAATGTAAGCCATGTCGTCACCCCCGATGCCTTCGTGTGTCGCACCGTTTGCACCTTCCATCCCAACTGCCTCTTCTTCACATTCTACACGAATGAGTGGGAGACGGAATCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
NA
C2:
PF0002421=PAN_1=PU(61.9=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTTGCCTGCTGAAGCG
R:
CTCTGTGATTCCGTCTCCCAC
Band lengths:
270-1387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]