RnoINT0080257 @ rn6
Intron Retention
Gene
ENSRNOG00000007310 | Klrb1a
Description
killer cell lectin-like receptor subfamily B, member 1A [Source:RGD Symbol;Acc:1586149]
Coordinates
chr4:161964273-161966616:-
Coord C1 exon
chr4:161966479-161966616
Coord A exon
chr4:161964372-161966478
Coord C2 exon
chr4:161964273-161964371
Length
2107 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CAAAGTATTTAACTTCACAGATG
3' ss Score
5.18
Exon sequences
Seq C1 exon
CTCAGAGTTTGTCCCAGCTCACCAGTTCAATGTCGCCTCTCCCAAGTACAATGGACACAGCACGTGTCTACCTCAGTTTAAAGCCATCCAAGACTGCCGCGGGGGCTCAGTGTGTATCACCTCCATCTCTTCCCCCAG
Seq A exon
GTCAGTAGCTTCATTTTCCTTTGCAGCATTAGAAGTTCTTCCAGAGTTATCATTTTTCTTACAGTTTTAAATTATTGCTTTGACGATTGAGCACCTTCCTGTCGGCGCTGAAGAGCGTGGATGGTTCAACTTTAGAGAGAGTAGGAAAGCTCACTGGATCCATCTTTAGTCAGTTAGTCGGTGTGAAACTTGGGCAGGCGCTCCTTTTGGCTTTAGTCAAGGGCCTCAAAGAAAGGATAATTTACATCTACAAGGGCAGGGGTGCTTCTAGCAGGCAGACCCACTATAAAGCATCTTGTCTGGTCCAAACTGCTCTACAGAGCACAAATGCCACGACTCCTCTCCACGCCATTCTAGCACTGAGCACTGAAGGAGCTGACACCCTGTCTGTCAATACAGAAGGCTGACAGGAGGTGTATGTGAAGGGTGCCATGACTTAGGGATGAAGAGACAGACGCAGAGGCAAAAAATATGTCTACAGTGGCCATGGTATGGTATGAGGTTCTGTGACATAACTAAGCTTCCTTAAAGAAAACTGCAGTGCTTAAAATCTAGCCTTTCTGTATTGCGTCAAGAATAGGAACCACAACTCTTTAAGGCTTCTTTCAAGAACTATTAAATTAACAGATTTTTTTTTTCTTTAATCAGGACAAAAAAGCCCTGAGAAAGAAGTCACCAAATAAGCTTTATTATAAACTTGACAGATGGGTCTGGGAAAGGTGGAGGGATTTGATAACTAGAGGGAGGATTTGAGGGAGCCAGTTATGTGTGATACGTGCAAGCATTTGTTTCCCCTCTTTATGGCTGCAAATGTGGAAGAAGGGGCTTGAAAAGCTTGAATAAAACTGACTCTCCCACTCCTGGCAGTCATCAACTGTCAATGTCTCCCCAGCTGGGGTTGGACCTCCATGCCCAACTCCCCTCACCCCCGACATGCTGGGCCTTTGTGTGACTTGAGCTTATGCGGTTATCACAAATGGCATAAGTTCATGTGTGCAATTGCTCTGCTGTGTCTAGAAGACAGTGTTTCATTGTTGTTATCCATCATCTCTGGCTCTGCAGCCATTCTTGCCCCCTCCTCTGTGATGATGGCTGAGCCTCGGTTGAGGATGGGATGAAGTGCAGATGTCCCATTTAGGGCAGAGTACTTCATAGTCTCTTGCTCTCTACATGTTGTGCCTGGTGCACACCTATAATCCCATCACTTGGGAGGTGGAGGCAGGAGAATCAGGAGCTCAAGGTCATCTTCAGCCACGTGGAGAGCTAGCAGTGGGCATTGACCAAGGGCAACCCTGTCTCAGAAACAGAGCAGAGCACAGCAAAAAGAAAATTTGAAAGCATTCTATTGAAGGAAAGAACACTGAAAACTACAGCCACATTGTATAATATGTGCTTTGTGTGTGTGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCAGTGTACCTAGAGTCTGGTACTCCCACAGTTTCAGTTCATCTATCCAATAGAGAGTTTAAAACTCAGCCAATAAGGCAGGACTAACACAACTGAAATACTGAAAATGCCGTCTGAATACATGAGATGCTTCTCCTTGGATGCCATGCCTTTGATCCAAAATGGAGATCATTGTAGGCATTAGTGAAGCAGACTCCACGTCCAGGAATAGAATCATATGTCATTAGCACTGAAAGTCAAAATTACCACAAAACTGAGTATCAAAATGTTTCTTGATTAAAAGAAGATCCTCCTTAGAGATGCTTTGACTCCCTTTCCACAACAGGACAGAGCATTTATTTTTGGACAGCACTCAGCGGCTGTCAACACATCTTACATTTATCAAGTTTGATTAAGACAATGCTCCTTTGTACATAATACTTGCATAGCATTATTCTTTGAGTCCTGTTTAATCACAGCAAACAGTTAAACCTAACAGAGAATTCATCTCGTGGAATTCTGCTTTAAGATGGTGGAGAAAGGCTTCTCTCTGCAGCCCACCCTCTACTTGAATCAAATTGTTCTTGTTAGTCGAAACCACCTTTAACTGTTATTCCAGATGTCCTCAACTGACTTAAGTGAGTTACAAAGTATTTAACTTCACAG
Seq C2 exon
ATGCCTGTCGGTGCCCACGTTCACACAGGTTGGCTTTGAAGCTCAGCTGCGCTGGGCTGATCCTTCTTGTCTTGGCCCTGGTTGGGATGAGTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007310:ENSRNOT00000009594:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]