RnoEX0047517 @ rn6
Exon Skipping
Gene
ENSRNOG00000007310 | Klrb1a
Description
killer cell lectin-like receptor subfamily B, member 1A [Source:RGD Symbol;Acc:1586149]
Coordinates
chr4:161962999-161966616:-
Coord C1 exon
chr4:161966479-161966616
Coord A exon
chr4:161964273-161964371
Coord C2 exon
chr4:161962999-161963070
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAAAGTATTTAACTTCACAGATG
3' ss Score
5.18
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CTCAGAGTTTGTCCCAGCTCACCAGTTCAATGTCGCCTCTCCCAAGTACAATGGACACAGCACGTGTCTACCTCAGTTTAAAGCCATCCAAGACTGCCGCGGGGGCTCAGTGTGTATCACCTCCATCTCTTCCCCCAG
Seq A exon
ATGCCTGTCGGTGCCCACGTTCACACAGGTTGGCTTTGAAGCTCAGCTGCGCTGGGCTGATCCTTCTTGTCTTGGCCCTGGTTGGGATGAGTATTTTAG
Seq C2 exon
TGCGAGTCTTAGTTCAAAAACCATCAGTGGAGCCATGCCGAGTGCTTATTCAAGAGAACCTGAGTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007310-'8-9,'8-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGTCCCAGCTCACCAG
R:
CGGCATGGCTCCACTGATG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]