MmuEX1015935 @ mm10
Exon Skipping
Gene
ENSMUSG00000030361 | Klrb1a
Description
killer cell lectin-like receptor subfamily B member 1A [Source:MGI Symbol;Acc:MGI:107540]
Coordinates
chr6:128619100-128622934:-
Coord C1 exon
chr6:128622731-128622934
Coord A exon
chr6:128620252-128620350
Coord C2 exon
chr6:128619100-128619174
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAAGGTTCTTAACTTCGCAGATG
3' ss Score
7.14
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTCAGTGGGTGTAGGCACAGAGCAGAGCATTCACAGAGGACTTCCTTTTGCTCACTTCACCCCAAAGGCCTTGGAGTTTGCCCCTGCTCACCAGTTCAGTGATGCATCTCCTATGCACAATGGACACAGCAAGGGTCTACTTTGGTTTAAAGCCACCCAGGACTCCAGGGGCTTGGCATGAGTCACCCCCATCTCTTCCCCCAG
Seq A exon
ATGCCTGTCGGTGCCCACGTTCACACAGGTTGGCTCTGAAGCTCAGCTGTGCTGGGCTCATCCTCCTTGTCGTGACCCTGATTGGGATGAGTGTTTTAG
Seq C2 exon
TGCGAGTCCTAATACAAAAACCATCAATAGAAAAATGCTATGTGCTTATTCAAGAGAACCTGAATAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030361-'2-7,'2-6,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTCACTTCACCCCAAAGG
R:
TGGTTTTTGTATTAGGACTCGCA
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types