RnoINT0080270 @ rn6
Intron Retention
Gene
ENSRNOG00000052467 | Klrc2
Description
killer cell lectin-like receptor subfamily C, member 2 [Source:RGD Symbol;Acc:2977]
Coordinates
chr4:163423029-163423628:-
Coord C1 exon
chr4:163423460-163423628
Coord A exon
chr4:163423131-163423459
Coord C2 exon
chr4:163423029-163423130
Length
329 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
ACTTCCATTTATTTCTGTAGATT
3' ss Score
9.19
Exon sequences
Seq C1 exon
ATGAGTCACCTGCTCAGAACTGAAAGTGCCTCAGAACCCAGGAAATCCACAAAGAAAACCCAGTCGCAGCTCCATTTCAGTAATCGAGCAGGAGATCACCTGCTGGAATTTAGCTTTCAACATGCTTCCCAGAAGCATCTCAAGATCAGCAGGCAGGGCTACTGCAAAA
Seq A exon
GTAAGGCATTGATTTTTCAGCTTAACAGTTCTATAGTGCCAGCCAGCGTGCAAAGGTGGGAAAAGGGCCAAAGGGGAAAGAAAAGAGCTGTAACTTGACCCATGCAGTTGTAATGCAAGTTGTAAACACAGTTGCATTCAGACATTGTTACAAGACTATATAAATCATTTTGTTCACTAAAAATGCAATGATATTTGCTACAGCATGACTGCAGCATAGAGGCAAGTCTGGGGGCTGAATTAATCTGATTCTCTGGGCTCTCTTCTGTGTAAAGCCTATGAGCATCTGTGTCTGATATTTTCTCTTAACACTTCCATTTATTTCTGTAG
Seq C2 exon
ATTTTTCATCACCTCCAGAGAAGCTCATTTCTGGGATTCTGGGCATCATCTGGTTTGCCTTATTGATCACTCTGGTGTTCTCAACAAGAATTGTTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052467:ENSRNOT00000079526:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083915=Ly49=PU(54.4=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCACCTGCTCAGAACTGA
R:
ACAATTCTTGTTGAGAACACCAGAGT
Band lengths:
262-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]