RnoINT0081178 @ rn6
Intron Retention
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8752625-8752898:-
Coord C1 exon
chr3:8752812-8752898
Coord A exon
chr3:8752731-8752811
Coord C2 exon
chr3:8752625-8752730
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTCGGTGTATATCTTGCAGGAC
3' ss Score
9.02
Exon sequences
Seq C1 exon
GGCTTGGTGGGCATCCCTGTCTCCACATTCTTCAGTCGGCCCCATCAGAAGGACTTTGACCACTACATCCGATTCTGTTTTGTCAAG
Seq A exon
GTGAGAGAAAGCTGGGAGAAGGCCGCTGGGCCTGGATAGCCACTGGTTGGGGCAAGAGAAGACTCGGTGTATATCTTGCAG
Seq C2 exon
GACAAGGCCACACTCCAGGCCATGGATGAGAGACTGCGCAAGTGGAAAGAGCTCCAACCCTGAGGAGGCTGCCCTCAGCCCCACCTCGAACACAGGCCTCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097:ENSRNOT00000021865:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.2=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=PD(2.8=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACATTCTTCAGTCGGCC
R:
ATAGCTGAGGCCTGTGTTCGA
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]