GgaINT1008467 @ galGal4
Intron Retention
Gene
ENSGALG00000004604 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr17:5284710-5285555:-
Coord C1 exon
chr17:5285469-5285555
Coord A exon
chr17:5285288-5285468
Coord C2 exon
chr17:5284710-5285287
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AACCCACGGTGTTTATTCAGGAG
3' ss Score
6.15
Exon sequences
Seq C1 exon
GGACTGGCGGCCATCCCCCTCTCGGCGTTCTACTGTGGGGCCCACAAGGACAACTACAACACTTTCATCCGGTTCTGCTTCGCCAAG
Seq A exon
GTGAGACACATGGCCAGGGCATCGCAGCTGGGCCCGGCCGGCCGAGCCCCTCAGGTGTGGCTGTGCCCGCATCGCATGAAACACAGGGCAAGAATTGGGTTTTTTGTACAAACAACAAGTGTGGTGAGGGGAAGGGGGAGCTGACCGGAGGCCACAAACTGAACCCACGGTGTTTATTCAG
Seq C2 exon
GAGGATGCCACGCTGAAGGCAGCAGACGACATACTGCAAAGATGGAAACTGGAGAAAACTGCTCCCTGAAGGCACTGCGGGGGAACCGTCTCTCCACGGCTGCACTTCTTCCTCTTCCTTTACTTGGCTACAAACTCTGCTACGTCCTGATTTTTGTGCTTTCAACCACGTTTTCTGTCAGACAAGCGGGTATGAGGGCTGCCAGGCCCAGGACTGGGGGACACAGCTTTCACTGTGAAACAATCACGAGCAGTGAGCCTCCATATGCCATTCAGCTGCCATTCAGCACTTTTCCTCCACGTTTAAAGACTTTGCTCATCAATTCTGAGATGTGCACAGCGAGACACAACGGTAAGGATGGCTCCTGGGGTCTTTTCCATCACTCACTTTCAGGAGGCTGTATGGGATCACTGCCCCTCAGCAAGCTGATTCCCACAGTCCTGAAAGCTGTGAACCCAGAGATCTGAGGTTTGCTAAAATTAGCAATATTCCCTTTGGTTTTGGGAAGGTGAGCACAGGTTCAGTAACCGCCTGCCCTCAGGAAATAGGTCTTTAAATGGAGCTTGGCTACAGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604:ENSGALT00000007326:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.2=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=PD(2.6=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACAAGGACAACTACAA
R:
CCTCATACCCGCTTGTCTGAC
Band lengths:
246-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]