RnoINT0084204 @ rn6
Intron Retention
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70594889-70596398:-
Coord C1 exon
chr13:70596262-70596398
Coord A exon
chr13:70595012-70596261
Coord C2 exon
chr13:70594889-70595011
Length
1250 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
ACGGTGTTGTTGTCTTGCAGATG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTGCCGAGCAGGCTACTATCATCTGGACAGGGCAAACCCTGAGGGCTGCACCCAGTGTTTCTGCTATGGGCATTCAGACAGCTGCCACACCTCTGCTGACTTCAGTGTCCACAAAATCACCTCAACTTTCAATCAGG
Seq A exon
GTAAAGTAGCTCAACAAAGGGTTTAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCATTGTAAAAAGATCTGGAACTTGTGTTTACAACAGTGGCTTCCCTAATCACAGGATGGTCTCTCAAGTCCCGGTTAGTCCGCCTCCAAGGTCCTGGAATTACAAAGCTGTGACATCACACCCAGCTCAATTTCGTGCCAGGGTGGAACCGAGGACTCTACGTATGCTGGCAGACACCTTACTAACTGAGCAACGTCTCTAGCTCTCCTGTATTATTTTTTAATGTACATTACCTTGTTGGGACCAGACAAACCATATGTCTTAAAAAATTACAGCTGAACAGCCTATGAATAACTTAAAAATAACTGAAAAAGAGACAAGCTATTAATATCCCTCTACTTCCCATGCATATTTATTTCAAAACCACAGAGATCTATTTATTCATGTGGAGGAGGGGTTTATGAGAATATTTCAGAATCCACGATCGCTAATAACATCATATCGCATTGAGTTAATAGATCTCCTTAGTCACCTTGCTTCAGAGTGCCACCAAGATATTGGAAATTGATATTATTTTAGCTTGCCTGAGTTTCTGCCTCACTTCATTAAGGCCAGATCTTGTTTTGATAAACATGATAAGGAACACAAATGACAGGCAGGTGAGAACAAGCCTAGAGTCATAAGCCTGAATCCTAGGAGTCCAAAGACCAGAGCCAGACAAGATAGGGCAAAGGGCCACAGAGAGGGTTGGGGCTAAGTGCACTGGCCACCAAGCCTGAGGACCTGAGTTCGATTCCTAGGACCCTCATAGTAATGGAAGAGAACTGACTGGGGCAAGCTGTCTTCTGACCTTCAAATAATCACACACACACACACACACACACACACACACACACACACACACACAAACACAGTGGCAATGTGGCATGCACACACACAAACACATACACACACATACACACACAAACTGTGGCATGCGCACATACACATGTACACACACTGTGGCATGTGCACACACATGCCCAAGAAATATTTTTACAATAGCTATTTTTTAAAGAGGTAAAGCTGCTGAAGACAAGAGCTGGTGGGTAGGAGTGACTGGGGAATTCCGGTTAGTGTAGAAGAAGACCAAAGTGCTAAGAAAACCCCTTTCTACTCCTTCTGGGGCTCTTTGGCCAGTGAGCCTTGCCTTGCCTAATTCAAAGGACAATGGGAGTGGTCTCAGGACGGTGTTGTTGTCTTGCAG
Seq C2 exon
ATGAAGATGGTTGGAAAGCAGTTCAGAGAAATTGGGCGCCTGCAAAACTCCACTGGTCACCGCGCCATCAGGATGTATTTAGTTCTGCCCGAAGATCAGACCCAGTCTATTTCGTGGCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667:ENSRNOT00000036947:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=34.0)
A:
NA
C2:
PF0005213=Laminin_B=PU(3.8=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGGCTACTATCATCTGG
R:
GGTGCCACGAAATAGACTGGG
Band lengths:
254-1504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]