RnoINT0084210 @ rn6
Intron Retention
Gene
ENSRNOG00000059507 | Lamc3
Description
laminin subunit gamma 3 [Source:RGD Symbol;Acc:1309399]
Coordinates
chr3:9294634-9297139:-
Coord C1 exon
chr3:9296915-9297139
Coord A exon
chr3:9294823-9296914
Coord C2 exon
chr3:9294634-9294822
Length
2092 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTGTTTGTCTTACTCCTTAGGGA
3' ss Score
11.2
Exon sequences
Seq C1 exon
GCCACGTGCTCTTGTGTGAAGTCCATCTCACATCGGCCCGGCCTCAGCGTGGGCTTGCCCCACCAGCCTCTTGGGTGGAGACCTGCTTATGTCCCCAGGGATACACGGGCCAGTTCTGTGAATTCTGTGCTCTGGGATACAAAAGAGAAATACCTCATGGGGGTCCCTATACCAACTGCATCCCCTGCACCTGCAACCAGCATGGAACCTGTGACCCCAACACAG
Seq A exon
GTAAGTCCCCAGAATCCCATTCCAAGGCTCCCTGGGCTATGTCGACACAGTGGGATGAAGACTGGTCCTCACAGATGGTCCTTGGGGGACACAGGCACTGCTTTGTCCTTGCCCTATTCCCTGGGGTTTCTCCTCTTGCAACAAAAAGCCTGATTGGAACCTAGGGGCCAGGATGTGCCTTCGGGGCCTTTCAGCCAGCCTCTCTGCAGCATCCGCCCACTGCCACCCGGTGGGCCCTGGGAAAGACTCGTGAGGGCCTTGCTTCCTAGCAGGTGCTGTGAGAATGCACAAGATGCAGCAGAAGAAAGACATTCAGAGAGCCATACAGATGACAGCAGCTTATGGGTGTCCACCACAGCCACTGCATCATGGCTGTGGTCTTGGAAAAGTCACTTCCCTCCCTGAATGTCCCCATCTATACAGTACAGACAGCAATAGTGTATACACAGCCCAGGCCATGGAGGCAAAGTACATGAAGGTCAGGAATTGTCTAGACATTAAAAAAAAAAAACAAAAAATAGAGCCTTCTTTGCACTGAAGTTCAGGGGAGGCTGACCAGGTGAGCCGTGGGCTCTTTTCCTGGGAGAGACAGATAGGGAAGTAATAAGATAATATCTTCCTCTTTCTCCCTGATGTCCTATCCAAAACAGGAACCTGAGGTGTGGGATGACCTCATGACCTGTAGGTGACAGAGTCACTCCTCCCACCAGCTTGGGATGGCAGTGTCATTCAATAGAGGTATTCCTCACATCAATAGAGATGCGGAAACCTCACCGTAGGTCATCTGGTGTGCCGGGGTATCACAGGCCTTTCACCCCACTGCCTCCCAGGATAGGTGGGATCTCTGATACATAGATCATTATGCATAGGTTCTGTGCCTGGCAGACAGCACCAATTGAGCCTAGATGAGGCCTTGCAATCCTTTCCCGGATAATGCTCCCTGCAGCTCCTACTGGGGAAACAAAATCTCCTCATGAGATGGAACTGGTTTTTTTTTACCCCCCCCCACCCCACAGAGCCCTTGACTTTGCCACAACTTTTCATTCCACATAAGCAAGCCTTCATCTGTGAAATGGGTAGATCAGCTGGTCTGAAAATCAAGCCTGAAGGTGTGAGCCAAGGCAAAAGTACTCCCTGGCTCCGCTCACCTAGGGAATGAAGTTCCCTTCCATTCTCCTCACAGCCCTGGCTGGACACTACTGGTTGTCCCCGTAGGGCTGCTCTTGGGTCTCCATGGTGAGTCAGGACCCTAGGCTCTGAGGAGACGCCAGAGGTTGCTGGATGGAGAAGGGGGTCTGTGATATCCTCCATCTTCCCAGTACCAGGAGGCAGAACAGAGTTCCCATACCAATAACCTGTACGAAATCATAGTTCCTGTACAGAGAGAGTCTCCCCCAAGGCTGGAGGCGGGAGCCTGTGTCTCCCTTTAGGTGGGTCCCTCAAGGTGAAGAGAACACAGGAGCAGGGAAAGGAAACAATGTAACCGTGCCTTGCATTGGTGCAGAGAGCTGTGAGTTAGGAATAGCGAAACAAGCACCCAAGCACTGCCACCACCACCAGCTCTGCCACTCTATCCATCAGCTCCTGCAGGCATATTTGTGGTGCGGCCTCTGGTAACATTCACCCCATCCTCCAAGACAGGGATCCGAGGTGCAAGGTGGCCACATGGCCAGTAGGTGGCAGAGTCACACCTCCTACCCATGGAGGGGCAGGTTAGATGGTTTGCCCAGATCACACGGGCCATCTGTGTGTAGGCTCGTCTGGCTGAGTTGGATGATTTACCACAAGCCCCTGATGTCTCACTAGTCTACCAGGGTGTGCCCCATGGCTCCTCCACCAGGATACTCACTGTCTAGGTGAGCGGTTCTCAATCTGTAAGTCCCCAACCTCTTGGCAAACCTCTATCTCTGGAAATGGTTGCAATTCCTAACAGTAGTAGCACAATCATGGTTATAAAGTAGCAACGGAAATAATTTTATGGTTGGGGGTCACCACAGGGTGAGGAACTGTGTTAAAGAGTCATAGCATTAGAAAGGTTGAGAACCATTGCTCTGGGCTGAGGTAGTGAACTCGTGTTTGTCTTACTCCTTAG
Seq C2 exon
GGATCTGCCTGTGTGGCCACCACACGGAGGGTCCATCCTGTGAGCGATGCATGCCAGGTTTCTACGGTAACGCCTTCTCAGGCCACGCTGATGATTGCCAGCCCTGTCCATGCCCTGGCCAATCAGCCTGCACGACCATCCCAGAGAGTAGAGATGTGGTGTGCACACACTGCCCCCCTGGTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059507:ENSRNOT00000090137:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=PD(19.3=34.2),PF0005319=Laminin_EGF=PU(28.3=17.1)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(69.6=50.0),PF0005319=Laminin_EGF=PU(52.8=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]