RnoINT0086082 @ rn6
Intron Retention
Gene
ENSRNOG00000015727 | Loxl4
Description
lysyl oxidase-like 4 [Source:RGD Symbol;Acc:1308588]
Coordinates
chr1:261845740-261846139:-
Coord C1 exon
chr1:261846101-261846139
Coord A exon
chr1:261845960-261846100
Coord C2 exon
chr1:261845740-261845959
Length
141 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CATATTTTCTTGTCTTCCAGACT
3' ss Score
9.22
Exon sequences
Seq C1 exon
AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG
Seq A exon
GTGAGGAGTGGTATGTTAGCAGGCAAAAGGGTATGACATGAAGTGCTCCCCCTCCTCCTCTTACCCCTTTTCCCCTTTTCTCCCCTGAGCTCCCTCATCCCCACTCAAACCCTCCTCCACCCATATTTTCTTGTCTTCCAG
Seq C2 exon
ACTCAATGGCCTGACAAAGAAGAACTCCTTCTGGATTCACCGGGTTGACTGTTTGGGGACAGAACCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGAGGCAAGCTCCGGCCAGCCTGTCCGGGCGGCATGCACGCTGTGGTCAACTGTGTGGCAGGGCCGCATTTTCAGCGACAGAAGCCAAAGCCTAAGCGCAAGGAGTCTGGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015727:ENSRNOT00000021144:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF0053013=SRCR=FE(11.0=100)
A:
NA
C2:
PF0053013=SRCR=PD(44.9=71.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCTGAAGATGAAGGATCCC
R:
GACTCCTTGCGCTTAGGCTTT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]