RnoINT0087530 @ rn6
Intron Retention
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108530123-108532479:-
Coord C1 exon
chr6:108532357-108532479
Coord A exon
chr6:108530288-108532356
Coord C2 exon
chr6:108530123-108530287
Length
2069 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
ACGTGCCCTGTCTGTTGCAGCGG
3' ss Score
10.98
Exon sequences
Seq C1 exon
ACATCAATGAGTGCCTGACCCTGGGCCTGTGCAAGGATTCAGAGTGTGTGAACACCAGGGGCAGCTACCTGTGCACCTGCAGGCCCGGCCTCATGCTGGATCCATCAAGGAGCCGCTGTGTAT
Seq A exon
GTAAGTGATGGTGGGCCTTGGGGCGAGAGACACCCTCCAGGGGCACAGCCCAGACTGAGAGGCAAATTTCCCCAAACCTCATGGTCTCATGCCCAGAGCCAGTGTCTGCTATGAACTTGGAGTTGGGCCAATGTACAGAATTGATCTGTGTGCCCTGTGGGCACTGGAGGTTACAGCCCCACTTTTGACTTCCGGCTTCTCTTCTAAAACTTTTTTTGGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCAAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAAACTTTTTTTGTGATTCACGTTTTCTGAGTTTTGTTTTGTTTTCCTCTCTGATCATTTCTGTCCTGTTTGCTGTCTCACTGTCCTCGAAGGTGAGCGCTGCCACTTTGAAGTGTCTGGGTGAGCCGTATCTGCTAATTAAACTACTATCCAAGTTTAGCAACCAGGTCACGTGGCTGCTAAGTGATTTTTTTTCTTTTTAATTATGTGTATGGATGTTTTGCTTGTATTATGTCTGTGCACAGTGTGCCTAGTGTCCGCAGAGGCCAGAAGAGGGCATTAGATCCCCTGAAACTGGAGTTATAGGTGATTCTCAGCTGCCATGTGGGTGCTGGGATTCAGACCCTGGTCCTCTGGGAGAGCAGACAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCCCTAGGTGATTTAAAGGAACATTCATTTGTCTATGGGAGAGCGGTGTTCCTGCCCCATCCCAATGCCTTTGTATTACTTCCTGGTTCTTTTTGTGTGCATCTCCATGACCATGAATACACACCTGTTGTGAGTTATGATTTTACATAGTGAATGTGTGTACAGTCCTTGTAAACCCTGGCAGTTCTGTTCCCAGTGACCTCTGTGGTTTCTAGCTGACAGAGTTCCAGACTACCAGGCCCTTCCTCAGACAGCAGAGCTGATACCACAGCCCATGTGAGGCCCTTCCTTAGGAAAAAAGGTCTGACCAGAACAGAATAAAACCAGTCCCCAGAGACCTCTGGCACAGCCTTCTAACTCACAGAGCACTCTGGCTGGCCACAAAGTGCCTGCTCCTGGGTCTGGGGATGCCACAGGAGGAACCAGACTATGCTGCCACCCAGAGGTAGTGGCACGAAGAAGGGTCTGGCTCTGACTCTAAGGATCGGAGACAGTGGAAGCCCTGAGAGTCGGTTTGTTTGTGGTAGCAATAACTTGTAATCAGGGCCCCGAGGACCTTATCGTCTTTCCTTTTCCAAGCCTTAAGGTTCCTTCATTGGGCTGGGCATGGTGGTGCATGCCTTTATCCCCAGAACCCTGGAAACAGAGGCTAGTCTGGTCTGCAGTGATTTTGAGGCTGGCCAAAGCTCCATAGCAAAACCTTGTCTCAAAAAAACAAAACAAAAGTTTCTTTATCAGAGACTTTACTTAACACTGGTAAAGGTCACTCTGGTAAAGGCATTTTAATGAAGAAACATGGAGAGAAGCAGTGGGCTCTCTCTTCATTTTCTCTCCCTCCCCAAGGCTCCTCTTTCCCCTTCCTCCAAGAATTCATTCTCCTGCAGATGGAGAAGTCATGTTGATGACTTCCCCTATTAGCATAATAGAGAAGTCTCTGGAGGCTGGCCCAGCTTCCCAGTATTCCACCCTGGGATTCAAAGGTATAGAGTCTCTGGTTCTCTTCTCACCCCATCATCCTGAAGCACACTCGAGAACAATGTCTTACTAAACACTTTGAAGGCAGCAGGTGGAGACAAACAGCTCCATCCCCACCCAGGTCTGCTCTCACACTTCCTGTATGAACCTAGGGCCTCATCAGGTAAACACCATGGGGAGATGTGGGCGCTTCCACTGCAGCCATTCCCGCTGAAGTTCTTGTGAGCATCCGAACTTCCCAGGCTGAGACATAAGCCAGGCTAGTCCTGGTGGCGGTGGCTGACCACACCTCTGTCCACGGCCTTCTGTACTTTTTCCCTCACACTGGCTACTTGCCCATCCCCACGTGCCCTGTCTGTTGCAG
Seq C2 exon
CGGACAAGGCTGTCTCCATGAAACAGGGACTCTGTTACCGGTCACTGGTGTCTGGCACCTGCACCCTGCCTTTGGTACAACGGATCACCAAGCAGATATGCTGTTGCAGCCGTGTGGGCAAAGCCTGGGGCAGCAAATGTGAACACTGCCCCCTGCCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094:ENSRNOT00000031331:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF0068312=TB=PU(86.0=66.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]