RnoINT0088585 @ rn6
Intron Retention
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2793269-2793624:-
Coord C1 exon
chr3:2793514-2793624
Coord A exon
chr3:2793443-2793513
Coord C2 exon
chr3:2793269-2793442
Length
71 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CTGACCACTCATTCTCATAGGTT
3' ss Score
7.45
Exon sequences
Seq C1 exon
CTGCACAGTCTCTAGGCAAGACCTGGGTCCCTGACCACTGCAGAAGCCCCACCGAAGCTACGTGCAACTTTGTGTGTGACTGTGGAGACTGTTCAGATGAGGCTCAGTGTG
Seq A exon
GTGAGCTGGTCAGGGGGTTGTGGTAGGGAGTGGTAGCATAAAGGCAGACCCCTGACCACTCATTCTCATAG
Seq C2 exon
GTTTCCACGGTGCCTCAACTACCCCAAACACCCCCTTCACCTGCAACTTTGAGCAGGATCCCTGTGGCTGGCAGGACATCAGCACCTCGGGCTATCGATGGCTTCGAGACCGGGCAGGGGCAGGGCTGGATAGTTCTGGGCCCCATTCTGACCATACACGTGGCACTGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584:ENSRNOT00000022390:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062918=MAM=PU(28.0=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTCTCTAGGCAAGACC
R:
TCCTGCTCAAAGTTGCAGGTG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]