RnoINT0090121 @ rn6
Intron Retention
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70573848-70574842:-
Coord C1 exon
chr7:70574184-70574842
Coord A exon
chr7:70574002-70574183
Coord C2 exon
chr7:70573848-70574001
Length
182 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCTATAACCATTCTTCTTAGCCC
3' ss Score
2.6
Exon sequences
Seq C1 exon
GTGCCCCTGCCCCACCAGCTGCCTCCAAAGCCCCCGTAGTCCCCAGCCCTGTGCTTCAAAGCCCATGTGACAAAGGGCTGGGGTTGGGGGCAGGCCCAGCCTGCCCTCTGCCTCCCTTGGCTGGTGAAGAGGCTTTCCCTTTCCCCAGCCCTGAGCAGGGCCTGGCGCTCAGCGGAGCTGGCTTCCCGGGGATGCTGGGGGCCTTGCCTCTCCCTCTGAGTCTGGGACAGCCTCCACCTTCTCCATTACTTAGCCACAGTTTATTTGGTGTGCTGGCTGGGGCAGGGCAGCCTCCTCCTGAGCCCCTGCTGCCCCCACCAGGGGGACCTGGCCCTCCCTTAGCCCCAGGCGAGCCTGAAGGGCCTTCACTCTTGGTGGCTTCTCTGCTCTCACCACCCCCTTCTGACCTCCTCCCCCCTCCTGCACCCCCTAGCAACCTCCTTGCCTCTTTTCTGCCCCTGTTGGCCCTGGGCCCCACAGCTGGGGATGGAGAAGGATCTGCAGAGGGAGCTGGGGGTCCAAATGGGGAGCCATTTTCAGGTTTGGGAGACCTGCCCCCCCTACTATTCCCCCCACTTTCAGCCCCACCCACCCTCATAGCTTTAAATTCTGCGCTGCTGGCTGCCAGCCTGGATCCCCCCTCGGGGACACCCCCCCAG
Seq A exon
GTAAGGCCCAGGGGATGAGCTGGTGGGGCAGAATAAGAACTAAATCAGGATGGGCTCTCCCCTGGGAGGAGTAGGGTGGGGAAGAAGGGAGCAAGGCCACTTCACTTGAAGTCTTAAGTGTGTGTGGGAGGTACTATATGCCTGTCAGACACTTCACCACATGCTATAACCATTCTTCTTAG
Seq C2 exon
CCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCTCAACTTCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209:ENSRNOT00000008854:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.877 A=NA C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGGATGGAGAAGGATCT
R:
GTCAGTAGTTGCCGTGGTGAC
Band lengths:
246-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]