RnoINT0092389 @ rn6
Intron Retention
Gene
ENSRNOG00000057645 | Micb
Description
MHC class I polypeptide-related sequence B [Source:RGD Symbol;Acc:1564508]
Coordinates
chr1:79754587-79769762:+
Coord C1 exon
chr1:79754587-79754704
Coord A exon
chr1:79754705-79769498
Coord C2 exon
chr1:79769499-79769762
Length
14794 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CCTGTCTCCTCCTCCCTCAGGAA
3' ss Score
11.62
Exon sequences
Seq C1 exon
AAGTATGTGCCCACACAAAGGAGGAAAATGGAAGCCAGTTCTGGAACAGCAGGACCAGCAGTCCTACTGTTGATCTTAGCGCTGCTCCTGACAGAGTCACAGGGATCCAGGAGCCAGG
Seq A exon
GTAAGCTCTGGGCAGGATGGGGACCATCCCTTTAAGGAGGGGAGGGGTGAGCCATAAATTATTTCTCTGCCGGTCAAATGAGTCAGATTTAGAGTATATTGGACAAAAGTTATCCCAAGGAACCAAGCCAAGGAGATCACAATGAGGAGGGAGGCACACGAAAGGGGGAAGAAAAAGAGAGAAAGTATACGCATAGAGAGAGGGAGAGAAGAGAGATCAGAGAAGTCTGGATTATAAAGGAAAAAAACCTCTGAGGGGGAGCGGGGGGGGGGGGGACCAGCCCCTGAGCTAGGTAGGGACTGAGGGGGCACCGGGAGACCTAGATCAGATCTGCTTTGGTATGTAAAGTATGCGCCTCAGCCCCTGTAAGGTTGGGTCAGAGCGAATGGGTACAGGAGGGAGAGGCAAAGAATGGAGCCGGAGCCGCGGAAACTGAAACTGGCGAGAGGCTTAGCCAGTTGAGCAGCTTTTGTAAAACATACCTCTGGCTGGCTTAAGTGGGCATGGGGTCACATGGGGAGGCTTTATTGTCAGCTGGAGGGCATAGGACTATTGTGATACCGTGGTATCGTGAAATCAGGAAGCCCCTGCAAGAACGAACTGGAAGCCCTTTGCTAGAGCTCAGTGGGTGGTCTTCTATGGAGAAAGTAGAATGCCTGCAGCTAGCGAAGGTTGCAGAAAATGCCTTATGCGTGGGGGAGTGTGGGGGAAATGGGGCTTTTAGTGTCCCTGCCCTGAAGATACACCCGGGAAGTTGGTGAGTGTCTCCATGGGCAGAGGCCTGGATAGAAAACCGAGTCTCTTAAGCGGTTAAGAGTGGGAGGGGCCAAACTGTGGAGAGTGTCCGGGAGGGTATGCGGAGGGGAACAATCTAGGCAAGTGTGAGAATTTCCCCTCCGGTCCTTGATTCCGGGGATAGTTGTAGAAGATTGTCTTTTAATGTTAGGGATAATTATTTTTATTGTTGTTGTCTCTTATTGTTTGAGGCAAATGGTCTCACTATGTAGCCTTGGCTATCCTGGAACTTGCTGTGTACACCAGGCTGGCCTTGGAGCTCTGCCTGGCTACCTAGAATTAATTTTCTCAATGGGAAATTGTGTGTGTTCTTGTGGGAGGGGGTGTGCGTGTGCAAGTGTGTGTGCATGCATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCAAGGGACAAACAGCAAAGATCTTCTGTTACCCTGAGATAGGGTCTCTGGCTAATGCAGATGCTCATGGTTCCAGCAGACTGACCAGTGAGTTTTTCAGGGCTGCCAATCTCAGCTCCTCAAAGCATTCTTATTCACTAAGCCAGCTCCCTATCATCTGGCTGCTTGCTTTTGACAGATCAATGGCCCAAGATTGGCATGCTTGATTTTTCAAATTCTCTCATATGGTAACAAACCTCACCATTACACAATGACCCCAAAATCGCTTCTATCTAAATTTTCTCTGCTCTACAATTTCAAAGGTCTCATATCGCTAAAGGGTTCTCTTACTTCCCAGACTTAAAACACTTGTAAGACTGTACTCTAAGCTCTATCTCGGAATTTGTAAATCCATTGGATATGATTTTTTAAAAAAAATCTATAAAATCTGTAGCAAAAATTAGGCTTAAAACTTATAGCAAAGGGGACTGGCGAGATGGTCCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGGTCCAATGCCCTCTTCTGGTGGTGTCTAAAGAGAAGGACAGTGCACTCATACACATAAAATAAATAAATCTTTTTTAAAAACTTACAATAGGACTGGAGAGATGGCTCAGCCATTAAAGGCTAGACTCACAACCAAAAATTTTTTAAAAGCTTATAACAAAGGGCTTCACATCAAAATCTATACATGGATAACATTAATTTGCTACAATTCATTATATATGGGATTCAACTCTTATTTAGAATATACTACATATGTAACTTGGATTCAACTCTCGTTTAAAATATAGATTAAAAATAGATATTCTAGAGAGAAGCCATGGCAGGACAATATGACTTAAGTGTAAGAAAGTGTGCAGTGGAGAAGAGAGTACACTCTGCCCACATTTCTGACTCCAAAGGAAAACACCTAACGCCATCTGGGACCCCGGTGCAGGGGGGCTCCCGGAAAAGGCGGCACAGGTCCTCCTGGTTGCAGCCCTCAGGGAGAGCTCAAAAGCAACACCTGAAAGATCCCCGAAGAGAGACCCTTACTCAAGTCTCGGGAAATCGCGGACCCCAGACACAGAGAGACCATTTTGGATGTAATACGCAAAGGTGAGGTTTATTACGGAGATCTATTACGGAGATCTCCAGGCCTACACGTATCCCACGCAGGAGATAGAGGTGTCGACCCCGAGTGGCTGGGAGAAGGGCTTTTTTAAAGGAAGAAGTCACAAGCTCCAGGAGATGGGAGGATGTCAGAAGGAAATACCAAAAATGTCACAAGGGGAAACTCTCAAAGTCACAGGATTGTCCTCATGATAGTGTTTTATGGTCAACTAGTTCCTGGAGCAGGGCTATTGAGGCCGGAGGAAGGTCAGGTCGTCCTCATTGTTCCCAAACTGCTTTGTCCCTTTGGGGTAAATGTTAGAGTTGTTGAAGCTCCTGCACCTGATAAACATCTGGATAGGCTTTGCTCCTGCCCTGGAATTTTTAATTTTTTTATCTGCCTTAAGATACCATCTCTCACACCCACGAGCAAACTTGAGCCTCAGGACCACAGGTAAGACCAACTTTTCTGCTCCAAGCGACCTGCCTGGTGAACTCAGGACACAGACCCACAGGAACAGCTGAAGACCTGTAGACAGGAAACACTACACGCCCAAAAGCAGAACACTCTGTTCCCATAACTGGCTGAAAGAAAACAGGAAAACAGGTCTACAGCACTCCTAACACACAGGCCTATAAGACGGTCTAGCCACTGTCAGAAATAGCAGAACAAAGTAACACCAGAGACAATCTGATGGCGAGAGGCAAGCGCAGGAACCCGAGCAACAGAAACCAAGACTACATGGCATCATCGGAGCCCAATTCTCCCACCAAAGCAGACACTGAATATCCAAACACACCAGAAAAGCAAGATCTAGATTTAAAATCATATTTGATCATGATGCTGGAGGACTTCAAGAAAGACGTGAAGAACTCCCTTAGAGAAACACAGGAAAACATTAATAAACAAGTAGAAGCCTATAGAGAGGAATCACAAAAATCCCTGAAAGAATTCCAGGAAAACACAATCAAACAGTTGAAGGAATTAAAAATGGAAATAGAAGCAATCAAGAAAGAACACATGGAGACAACCCTGGATATAGAAAACCAAAAGAAGAGACAAGGAGCTGTAGATACAAGCATCACCAACAGAATACAAGAGATAGAAGAGAGACTCTCGGGAGCAGAAGATTCCATAGAAATCATCGACACAACTGTCAAAGATAATGTAAAACGGAAAAAGCTACTGGTCCAAAACATACAGGAAATCAGGACTCAATGAGAAGATCAAACCTAAGGATAATAGGTATAGAAGAGAGTGAAGGCTCCCAGCTCAAAGGACCAGTAAATATCTTCAACAAAATCATAGAAGAAAACTTCCCTAACCTAAAGAAAGAGATGCCCATAAGCATACAAGAAGCCTACAGAACTCCAAATCGATTGGACCAGAAAAGAAACTCCTCCAGTCACATAATAGTCAAAACACCAAATGCACAAAATAAAGAAAGAATATTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAGACCTATCAGAATCACACCAGACTTTTCGCCAGAGACTATGAAAGCCAGAAGATCCTGGACAGATGTCATACAGACCCTAAGAGAACAAAAATGCCAGCCCAGGTTACTATAGTAGGATCTGATGGTTTTTTAATTTCCTCTGATTCTGTAGTTTATTCTCCAGGGCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTATTCTCTGGGGTTTGTGAAAAGTTGGGAACACAGACACACACACACAGACACAGACACACACAGAGACACACACACACACACACACACACACTGTGTGGGTAAACATACCACTTTAGGCAAAAATTCTCTACAGAAGAAAAAGGTTACCTCATAGCCACAAGCTACGTAGTCTCCAAAAACAATCACACCAAGAATATATTCTTCAAAAACAAATTAAAATCATTATATGAAATAAAGTTACAACAGAATTATCTATAATGTATTCTTTCTTTGAAACTCATACCTCACTAAACATTTCCCATCTATTTCTCCACCAGTTCATTGTAGCCCCAAAGCAATCATTCTTTTGTCATTGATTAACAAAGTTTAAGCAAGCCAGTCTATAGTAGCAAGTGTTTCCTATGCTGAGCTGATGACAGTTTGTATTTACCGAGAAACAGATCATCTCTTACCTCCTACTTTTGAAGTCCTGTTCAGCTGAGCTGGCTAATCAGCTCTTCTCCATTCTGTGGTGGGTAGTTTTAAGCTACTGCCTTTTAAGTTCTGAGCATTTTCTAAGCTCACTCTGGAGCCCCTACCTGACTCCCCTTTTGTGATACACCTGCCTTTGGTAATGAGAGGTGACAAGGCTCACCAGCCCCCTTACAGCTTCTCTGAATCTGTGGATAAAAGATACAACACACTCAGTTTGTTACTTTACAACTTGCCTTCAAGTCACAATGACTAACTCTCTCCCACCCGGAAAAGGGTGCCCTTACCAACTTATTATCTCTGTCTCTCCACTTGCCCGAAACTTCAGTGGCTAGTCCCACCTAGCCCCTGCCAAACATGCCAGCCTATGGCCACCTGCCTGTAGCTCCTTCTGAGACCTCACATGGCAGCTGGCTTTTTTTTCCTCCAAAGCATAACAGAAAGCTCCTCTCTCTCCTTCCTTGCATCTGCCTTTCTCTCCTGGGACCCAGAAGTCCTGCCTGTACCTTCCACCAAGCAATTGGCCCCTGGCTTTCTTTACTGACAAATCAAGAACCAATTGGGGAGCAATACCTTAGCAGCAGAACCACTCCCTTCACTATTCTTGTACTCAGAATTATTCATAACCCTGTCTTTTCCTGGTGTCCACTGAAACCTGTGACCACATCCCTAAATCACAAGATCCAGAACTCAGACACAATGCAAATGAAAGACACACACCCATTAGCTTATTTTCAACCTGCCTTCTTGGCTCAATTGCTGGGCGCTTCTAATCTCCCACTGTTAGCATTGCCCCTCCAAATACTCTTAGCTCAACGCCCTAAATCTGCCCTCAGCTTTAGTTTCTACTCCAGCCCAGTTGGGGACGTGACTGATGACCACTCCACCGTGGATCTCACATGGCTGGTGGCCTTTTCTCCCTCTAAAGCACGGTAAAAATCTCTTCTTCCCCTGCATCTCCTAGCCTACTCTAGTGGGAACCTGGAAGTCTGGCCTCTTTCCTTCCGCCCAACGATTTGCCCCTGGCATCTTTACTGATAGATCAAAAACCAACTGGGTGGGCTGGAGAGATGGCTCAGCGGATAAGAGCACTGGCTGTTCTTCCAGAGGACCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACGACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATGTAATAAATAAATAAATCTTAAATAAAAACAAACAATTGGATAAAAGGACTTAGCATCACAATCAGCCCCTACAGGAAACAAAACAATTAGCCCTATAATAATTCCTAAATTTAAAAGGAAACTCCATAAGGAACTTTTTAAACAAATGTTCTAACTGAATTAGAAAAGTAGGGGTTGGGGATTTAGCTCAGTGGCAGAGCGCTTGCCCAGAAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGGAAAAAGAAGAAGAAGAAAAAAAAAGAAAAGTAACTAGCCACTTCTTCTGCAGCCTAGAATGAGTAACCTGAGAATGCAGAGTTTCCAAACAGCTCTCAGATGTGCATGGACTTGATCTCGGGACCTCTCTGACCTATTACAGGACAGAGGAATAACACAAATCCATTTATAATTGGCATGGCACAGGGTGGTTAAGTGTGCCTTAATATTCAGAATCTGAGTCTCCATGTAAACAATGGCTTCCTGTAAAACATTAGTTCTGTCTGTCAAACCTGTATGGATCTTTTTCTGTGGGATCAGTGCTAAGAAAATATGTTGAGATAATTTATATGGTGAACAGTGTGCACCTGTCGTACCAAAGCGACAACCGGGGCTTACGTAGATCCCAGCGCCTAGAATGAGTGCAGCAATAAATCTCTTTGACCTCGAGAGAGCATTAGCAACCCATTCCAGTGCATCCATAGCAGAACTCTCCTACCAAGACTGTGAAAGATTAACAGGCAGCAAAACATAAGGTGGCTGACATACAATGAGGAAAACCTTAGGGCTCACGGTGGAATGTATGCAGCTGGTCATATAGCATTTTTCACAGGAAACGTTATATGCATATGCTCGTTTTTAGTAATGTTTCTATCCTCTGGGTACAGAATAGCAAATGGTGACGTAACATAGGACTGGCGTCCATCCGGTGCATCAGGAGCCACGTCCTCAAGTAATGATGGCTGAGGTGGGCATGATGAAAGTGGCAGGGGGGGAAGTCTCTGCCTCCAAGTTGTAGGCACAGTTCCTAGAAGTAATGGCTATTGTGGGGACGCACGCACAAACTAAGGCTGGCAATGCCCCTGCGTTCGTCTCCAGTAAGATGAGGCAACTCTGCATACTGTAATTTAAAGCACATTGCAGGTATGCTGCACAATCCTACAGGACAAGCAGTTGTAGGAAAATGTAATCCCACCTTAAAAGAAATGCTTATAAAACGAAAGGAAAGAATAAAGAGTCCCAGGGATAGATTAAATGGTACTCTGTTAACTTTCTGAACCTTAATAAGAAAGGAACGACAGCAGCTGAGAGACACTGGGTTATGGAAAAAACTGTGTAGGGCTGGAGAGATGACTCAGTGGTTAAGAGCACTGGCTGCTCCTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATCATGGGATCCGATGCCCTCTTCTGCTGTGTCTGAAGACAGTGACAATGTACTCAAATACATAAAATAAATCTTAAAAAAGGAAGAAAAACTGTGTAATTAAATCAGCATATATTATAAGGATATATCAACATCAGAATGGAAGCCAGCAAAAGTTTTACATTGGGAATGCAGATTTGTTTCTATTTCCACAGGAAATGAAAACCTGTGGATACACCAAAACTGATAAAAATTAGAACTGAGCAGGAGAGATCTCCTGAAAACCTTGGGCACTGACACAAAAGCCTTTATTTCATTGAAAATGTCTTTGTTTATAATTTCCTGATACACTCAGCACAATTAATGGCTTAAAACAGAAGCAAGGGGAATGTGGTGATATTTTTGAAAATTCTGGAAGTTTTGTTTCTTTTTTCTTTTTTAAAAAAAAACCACAGAAACATTGCATGCTTTCGTTTTAATCCAGGAGTAGGAATGTGAAGCTGCTTCAGGCTGTTTGCCGCAGCTGACCATGATTCGCCTCCTGCTCGGCAGAGGTGTGGTTTTGCCAGCTGCAGATGCTTGGAATTCTGGGAGCTTTTGAGAGGGTACATAAATGGGAGGTGCCCGGGGAGGGAGCTGGAGTTGGCTGTAGTTTGTAGTTTGTGAGTAACTATGATCACAGAAGAAACAAAAGGAAACAAACTACATTCAGGGACTTTCCTCCCTCCCCTCTAACCTTGTTCTCTCCTACCTAGCTTTAGGAGGCAAAACCTGGGGATAAAAGGTGGGGAAAAGAAGAACCCACAAAGTAGCCCAGAGCAGCTACATTGAGTCATACAAGAACTGTGAAATTCTATCCTGGCACACAATAAAAAAAGATCAGGAAAGTTCCTAGTCTACCTATGGATTGCACTTGTGGTTTAAAGTTTTATTTTAAAGCTCAAGCATCTTCGATTAAATCGTGGATTCACACTTTTAAGCCTCAAACAGGGATAAACCTGTAAGATCCTCATCTTCAAAAAACTACTCACAACTGGGCAGTCAGCGGTGCACATTTTTTTAAACCCCAGCACTCGGGAGGCAGAGGCAGGCAGATCTATTTGTGAGTTTGAGGCTAGCCTGGTCTACAGAGTGAGTCCAGGACAGGCAGGACTGCCGCAGACCACCCAGGGGAGTGTGTCAGCAGAGGGACCAAGGCTTGGATTTCAGGTAGAGAACAGATTCAGCGTGACAGACAGACACAAACTCGAGGTGTGTGCTGCTGCAAAAAGCTTTACTTCTTGGCATAGATTTAAGCAGTTAGAACAGGTCCATCATAATCGGCAGTCATCCAGCTCTTATTCGTTACCCCACCAAATGTCCCTTGCAAGGAGGAAAGCTGAACATACAGTCTAGGAAACAGTTCTCAGCCGCAGACAATAGTTTAGAAAACTGCAGTTATACTGCCAGACTTGTGGGCACCGGGTATGCATTCATCATTTACCTTTGTGGGGTTTTTTGTTTTGTTTTGTTTTTTTAAAGATTTATTTATTTCATGTATACGAGTGCACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCCCTAGCCCCTTACCTTTGTTTTAATAAAATTTAAACTCTATATTTATGGCCCCTCAGATTAATAAGGAAACTTTTATAACCATAGTTAACTCTTGATAAGTTTGTTCAACTTGTTGGAACTTGTCTATGATCTTTCTAAAAAAAATCGTTACTATTTTGAATCATGCTAAACAAAACTTTTTCAAAACGGGATTAAGGCTTTTCTGGAACAGTCATGTTGTTAGTAACTGCAATTACTCTCTCTCCTATTTACTGGGAGCTAATGGGTGCAGCAATTGAATTCATCGCAGCCATTGAGTTTATCAGGATCATGATGGTGTGAGACGTTTCCGTCTCTGAAATTTTAGCTCCTGAGACATCTAAAGGTACATGACCATCTTCCCACACTGCTATGTTCTTAAAATCAGATATTGTTGACAGGCTTAAAGTTGCTAAGATCACCAAGGCTAGAACACAGAAGGCACCTCCACCGCAAGCATAGACCCCAGTCATCATCTATTTATAGGGAGACGGCCAGGGCCTTCCAGGAGGCCGAGCCATTCCAGGCACAGGCCTCTGTTCTGGATAGAAACGAAGCACAAGAGCTTCGTGTCAGACAGACTCCACTGGAGTGGGTGTGGCACAGGACTACACATAGAAACCTTAACTAAAAAAAACAACCAAAAATGCTACTGTCTTGTAAACTGCTGTGTAATTCACGTAGTGGCAAGCTTTGTTTAGCCTCCTGTATATGTTTTCAAGGCTAAGCCTAAAGCAAGTAACTAAAACACAGTTTGTTTGGCTCACACATACTTAATAGATAATGGTCCTCAAACTCGTCAGCCATCTGCTGACTATGGCACTTAAAATGCTTAATAAAAAAGCTTCCCGGGCTGGAGAGACAGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACTACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATGAATAAATCTTTAAAAAAAAAAAAAAAGGTTTCCCATGCCATGCAGCCGTGACTTTAATTCAAGCCAGATTAGAATGTATAAAGACGGGCTTATTGGGAAGCAGCTCTCAGGCAGGTCCTAAGCAACAAGACCAGAGAAGTCACCATGAAGAAGGAAACAGAGGGGAGGAGGAGGAGAAAGAGAGAAAGAGTGTGCCCACACAGGGAGAAAGAAAAATGCAGAGAGGGAGAGAGAAGAAAAAAGGAAGGAAAGGCCACATAGTTTATGTAGGGCAGAGCCGCTTGGGGGAGGGGGAGCCTGTATGCCAGGCTAGGAACTGAGGGATGCCGGGGAACTTGGAGGCCAGGTCCACTCTGTGACGTTAAATAAAAATGCACCTGAGCGGTTTGCTCCAGATCTGAATTCCAACGCCTAGAACAACTATCCAGGTAGGGGGTGAATCTCTGTCATTGAAAGTGATAAGTAGACCATTTAGATTATACTTTCTGCTGTAGTTTATCCTTCTCAGACCCCTGATGGTATTGACTGTGTCAGTTTAACAATAGCAAAACAAACAAACAACAGCTCCTTCCCCAGGGCGACAGCTACCTTGGCAGTTCATTTGATCAGGCCTCCCTGTCCTGGAGTTCTGCTAAAAACACAAGCAGTCTCCCTCACTACCAAGCTCTGAAAGGACCTAAACTCGCAGATGGTTTTAACCCAAAATCATTTCCAGGTTCCCAAGCTTTTACTATAAGTCAAAGGCACGGGGCGGCAGTTCTTTCTACAATGTAGATGTCAGTATAGAGTACAAAGAGTGGTGATATTAGCACATCTAAAACTTATATCTCTTTTTGTAAACAATCCTTTTAAGTCAACTGGGATCCTCCTCTCACAGGTCAAACCTTCTCCAGGCAACCACCAGTCTAAGTTTCCCCACTTACTGCCTATTCTCAAGAATGGGATCCCACTCTTTTCCCTGGTTTTGAGACTTCTCTCCCACACTACTAGGACCGTGGGCCTGGAAGTTTCAAGTGTTCGCACAAGCTAAAAATGTTTGCTAACTCTAACTTCACCTCTGTCCCTAGTCTATCTGTATTGGAAGATTTCAATCCCACTGCGGACTGCTCCAGCAACTCATCAGCTCCAGGAGCCCTCAGAATCTGCATCCCAGATGGCTCCAAAGTGGCTCGAGCAGGCGCACAGGCGAGGGGGAGGGGAGGGGGACCCGCCCCTGCTCCCTGGTGATCATGCTCACAAACTGCTTCAAAGCCGCCTGCACTTCCTGGCTCTAGATGGTCCCTGGGAGCTAGACAGCAAGAGTGAAGTGGCCAGATCTCCCCTCTTCCTCTCATTCTTCCTCCCTGCTCCCTCTTCCTCCCCCTCCCCTCCCCTCTCCCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCCTCTCCCTCTCCCTCTCCCTCACCCTTCCCCCTCCCTCTCCCTCACCCTTCCCCCTCCCTCTCCCTCTCCCTCTCCCCCCTCTCTCCCTCACCCTTCCCTCTCTCTCACTCTTCCTCTTACCTTCCATCTCTCTCTCCCTCTCCCCCTCCCCCTCCCGCTCCCTCTCCCTCTCCCTCACCCTTCCCTCTTCCTTACCCTTCCCTCTCCCCCTCCCCCCTCCCTCTCCCTCACCCTTCCCTCTCCCTCTCACTCTTCCTCTCACCTTTCCTCTCTCTCTCCCTCTCCCCCTCCCCCTCCTTCTCCCTCTCCCTCACCCTTCCCTCTCTCTCCCCTTCCCTCCTCCCCCTCCCCCTCCCTCTCTCTCCTAGTCTTGGCCAGCATTCCAGCTTCCTTGGGACACATAGGTCATGACATTGGGAACAATAATGTCCCAGAGTCAGTGAAAGATGATTATGTTGCCTCGTCATTTATTATCAATGAAAAGGCTAAGCTGGTATGTAGCAGAATTTTAGCAGAGCCATTGTATCTGGCATGAATTCTGGACTGATGGCACCTAGGCTTTGAAGTAAGTAGCCTTTTGTAAATAGTGGTTGTTATCTGAGATTTATGGAGTTGCTCTTCCCAAGGATGCACAAAGCAATTGCATAACTTAGCCCCAGACATACCTTGCAAACCAGGAAGTCTAGGGATGAGAAGTGCTTGGTCAAGGTTTGATAAAAGTGCCCTTTGGGTAACAATAAAGAGCTTCTGAAAATCCCCTGGCTGTCCAGTCCTTCAGCGGCTGAGCCAGCCGGCTGCTGAAAAGGCCAAACTCACTCTGCAGTGTCCCGCTTTCTCAGAATTCTAAAGTAACCGGCTGAGGTGACATTTAACATATCAAACTGGGCCTGGCCATTGGGTTCTCCCAGCATCCCTCAGTCCTGACCTGTTACAGGGTCCTCCTTGCTGGTATATCCCACCCCATACCCTGAACTCTGCAACCCAGGAGCGGGGCTGCCCTTCCCCCATCAACTCTTCCATATCCAGCCATTTTGGTTATGTGGTTTGTTTTTTGTTTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTGTTTGTTTGTTTTTACTTTTTATCATTTTGGCCTCTTGGCCTCCTGGCTCTTCTCTCTCCCCCTCTCTTCACATGGCTCAGGGTCAGACTAGCACAGATGTCCCTGCCTCCAGCTGTGCCCTCCCTCAAATCTACAATAAACCTTCTCCTCCTCCACCATACCTAGAACTGCCTCCTCCTCCTCCTCCTCCACTTCCTCCTCCTCGTTTTCTTTCCATTCATGGAAGAAATAATCCACCCACATTTTATTTAATAGCACAATAATTTCCGTAGGTTCTTTGCCAGTAACTTCTTTAGAGCATGTCCTTCCCATCACTATTACGTCATAATCCTTTTGTAAATGAGGAGGTACAGATAGTTGCAGAGAATTATGACAGGCATAACCTTCTATTATACCATTACCTTGCCGATATGCAATCCCAGTCGGCAGTGAGGAGGAGGAAGGATAAGGGATAAGGTGTCGCACGCCCAGTTGACATGGCCCAAATTTTCAAATTTTGCTATTTTAGTTTCTCGACCATGAGAGTTAAGCATTTATGTATTGATTAGAGGAGCAGGAGAGGAGAGCGTCATCACAGTACCCCAGGAAATTTAATCAGCGCTGTTAGCACTTCCTCTAGGCTCTGCCCAACAGTTACCTAGCAACAGCCAGGCAGCACCTGGTTCACATATAAAAGGACCCTGCCTGTCCTCTTTCTTCTCTCTCCCTCTCTCTAGCTCTCTCTCCCTTTCCTTCTCTCTCTCTCCTCTCTTTCTTTCTCTCCTTGTCCTCTCTCTCCCCCCACCTGTTTCCGGCTGGCCTCTCCTCTTCTTTCTCTCTCTTCTCTTTCTGTCCTTCTCTGTCTCCTTTCTCTCTCTGCTGTTACTCCCTTCCCCAAGCCCATTTCCCATGTCCCAAATAAACTTCATTTTTCATATGCCTGATACCTGGGGGGGGGAAGGGAGGCACCTCAGCATGGGCCCCCTAAAGCTCCCCTCCCCCACATTACAAAATATACCAACTCTATATACTTGTGTCCTACTTGCAATTGTTCCTGTACTAGAAGTTGGGCCTGTTTTAATTTTTCCCCACGAAGGGACCATGGGTCAATTTATATTGAGTTACTCCCACTTTGAAGGAAAGCAAGCAAACAGAAAGAAAAAAGAAAAAGCTCTAAGGCAGCTGAGCCCCAGCCCATGCTGCCAGAGCTTGGCCCATCCGCCATTCCTCAGAACTCAGGTGTAGCTTGAGATACAGCTCTCTGCATTCAGTAAACCCCAGGCTAGGGGGGCATTAGCAGTTAGAGGGCTCTGAGACCCAGAGCTTTGGAATCTATTCCTCCGACCCCGTAAGACCTGCTGAAATGTGTTCAACAGAAAATTCTCCCCCACCCCACTCTGTTTCTCTCTTTTGTTCCTTGCTTTTGTTTGTTTGTTTTGTTTTATTGAACAGGGTTTCTCCGTGCAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGACTAGCCTCAAACTCAGAGATCTCCCTACCTCTGTCTCCCACGTGCCAGGATTTAAGGCGTGCACCATCATCCCCAGCCCAAGCAGAACACTATTGTATTCCAGCTTGCAAAATAACTGGCAGGGATTTTATTACCTCCCCACCACCACCACCACCCCGCCTTGGATGGGCTCTGATTCCATTAACTGCTATGAGTTTCAGATTATCAGCATTTATGGTTCTTGGCTTAGGAACAAAGTTGCAGGGCCACAGCTCTGAGTATTTTGCTTCTTCGGATGTTAGCACACATCTCAGTAATCACATGAAATGCACGGTCTCAAAAGACTGAGAAGAGCCCATGTTTGTTTCCATGTCCTCATGCTCTCCAGCCCTTGGGTAAGGGGCCTGAATTTCCTCATCTCCTGCTCACAATACTTCTCCCCTTCTCTCTTTCATGCTATAACAAAGCACCCCACATTCACACCCACAGCCGTACAGTTCTCTGAGTTCAGCCCCAAGGCAGAAGCAGTTAACTGCGGAAATTATCAACCGGTCAACTATGTCACCTGTCTCCTCCTCCCTCAG
Seq C2 exon
GAACCCACACTCTGCGCTATGATGTCACAGCCTGTTTTCTGGAGGGCTCTGAGCAGACCAGGCTCCTGGTCCTAATATACGTAGACGATGAGCTCTTCCTGAGGTACAATGGAGACAGGAGGAGTGCAAAGCCCTGGGCATGCTGGATTAAGGGCCATGGGGGAGATGAGACGTGTACAAGAGAGGCTGAGAATCTGCCGAAGGAGGAGGAGAGACTCAGGGAGATGATGGCTGATATGATAAACCAGAAGGGCCATGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057645:ENSRNOT00000083211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NA
C2:
PF0012913=MHC_I=PU(50.0=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]