HsaINT1022971 @ hg38
Intron Retention
Gene
ENSG00000204516 | MICB
Description
MHC class I polypeptide-related sequence B [Source:HGNC Symbol;Acc:HGNC:7091]
Coordinates
chr6:31498115-31505871:+
Coord C1 exon
chr6:31498115-31498263
Coord A exon
chr6:31498264-31505616
Coord C2 exon
chr6:31505617-31505871
Length
7353 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTGATTTCCTCTTCCCCAGAGC
3' ss Score
9.88
Exon sequences
Seq C1 exon
AAATTTCGACGGGGTCTTCTCACGGGTTTCATTCAGTTGGCCACTGCTGAGCAGCTGAGAAGGTGGCGACGTAGGGGCCATGGGGCTGGGCCGGGTCCTGCTGTTTCTGGCCGTCGCCTTCCCTTTTGCACCCCCGGCAGCCGCCGCTG
Seq A exon
GTGAGTGGGGTTCCTGGCGGTCCCCGGCGGAGCGGGAGCGGCGGGGCGTTTCCGGGGGTCCGGGTGGGTTGCCGCGAGCGCTGTGCGGTCAGGGCGGGGCTCAGGTGTGCTGTCTGGAGTGCAGGGAGCTGGACGCCGCCTGTTCCCGCCACACCTCAGCCCTGCTTTCCCATCTCCCGTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTGAGACGGAGTCTCTGTCGCCTAGGCTGTAGTGCAGTGGCGCGATCTTGGCTCACTGCAAGCGCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACCGTGTTAGTCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGACCTCCTGTCTCCTTTCAGTCCTCCTCGGGATCGCGCATCACCCGCATTTTCTGGTCTCTCCTGCACTTGCTCTCCTCGCCTCTCCTCCGTCTCCTCTCACTTTTCGGACAAACCAGTCCTTCTGAGGCCCCTGGGTTCCCGGGCTGCTCCTGTGAATGGCATTGGAAGGCCGTTCCAGCGCGGCCGCTGAGGCAGCCACTTCCCCCGGTGCTGGGGGCGGATCTCAGGTCCCTGAAGTCCTGTCCTCTCCCGGAGCCGATGTGTTCTCAGCTCCTGGGCCGCAGCTCCTGGAGTTGGGGCCCTCCTTTCTTGGGACCCGGAGGTGGTGCTTCTTGCTGCTGTGGGGACTGTGGGGGGTCCTGACTCTCAAGCTGAGGGGTTGGAGTCTGCAGGCTCCGGGCAGAGGATTCTTCCTGCGACTTCTGTCATCCCCAGCTCATTCTCCCCTCGCCTCCGGCTCCGGGGGTCCTCTCCTCTCTCGCATCCCACCCCTACTAATGACCAATGATCTAAGGACACCAGATTCCCTCTCACCTCCTCCCTGCCCATCTTACGGCGCCCTGGGTCCTGTTGCTCTCCCAGCTCCCTGCTACCCCTTCCTGTGTGCTGTTCTCTGATCCATTTCTAGGGTGTCCTCTGCCTTCATCCCCCGCCCCCGCCACTGAAGGTCCCTCCTGCCTCCTTTATGGGCCTTTCCTGCAAGCAGCCTTCACTCCGTGCTGCCCCTATGCCTCCCCATTCCCAAATGTCCCTGACTCTAACTTTCTGGTGCTGCCTTTTGTCCGGGGGGGTCTTCCCTCCATCCCACTCCCCTCCAGACCCCCAAGGAGAGCCCTGATGCTAATGGCAGTTGGGCCTTAGGCAGGGCGCAGGGCAGCGCAGATGCCCCCTCCCCTCCAGTGCAGGTGCCTGCTCTGGGCCCTGCCTCATTGTGGCCCCTTCCCCACTCCTTCATCCTCAGCCTCACCCTCTTGAGGACCCCACCCTCCAGCCCACAGGTGCTGGACCATCCCTCCCTGGTCCCTCCGCCCCTCTCCACCTTGGGACCTTGTGCTGCTCCTATCTCTTGCCCAGCTGCCTGGGGCCCTCAGCAAGTTCTCATCTTTCAGTGGGAAAGTGGGAGTGCTGGAGCATATGACAGTGCTGAGAATCTTTCCCAAGCCCCACCCTCCCCCAGAGCACCCTCCCCTCCTGTCCTCACCCTACCCCAAGTTCTCCCACAGTCACTCCTGCCCCATGCTCATGCCGCCCTCCAGTTCTTGCTCTGCCCATCTCCCCTCCCCAACCCAGACCTAAAACAGGCTGTTGGGCCAGCTGTTCCTTGACCTTCCTTCTTTTCTTTTGGTTCCTTGACCCCAGTGGGCTCTCACTCCCCACACCGCATATCTAAAATCTGTTTTGCCTGCTCTTGGGGTGCCACTGCTCCCCCTCCAGCATTACTCCTTTTGGCAGGTCCTTCCTCAGGCTGAGAATCTCCCCCTCTACCTTGGTTTTCTCTCTCTGGCCAGCACCCCCACCCCTTGCTTTGTTTTTAATTTTTAACTTTTGTTTGGGTACGTAGTAGATATGTATGTATATATTTATGGGGTACATGGGATATTTTGACACAGGCCTACAATATGTCATAATCACATCAGGGTAAATGGGTTATCTATCACAACAAGCATTTATCCTTTCTTTGTGCTACAAACAATCCCATTATGCTCTTTCAGTTATTTTTAAATGTACAATAAATTATTGTTGGCTGTACTCACCCTGCTGTGCTATCTACTAGATCTTATTCATTCTAACTATATTTTTGTACCCATTAACCATCCGCACTCCCCCACTCCCCACTACCCTTCTCAGCCTCTGGTAGTCGTCATTCTATTGTCTCTCCCCATGAGGTCCATTGTTTTAATTTTTGGCTGCCACAAATAAGTGAGAACATGCGAAGTTTGTCTCTCTGGGCCTGGGGCTTATTTCACTTCACATGATGACCTCCAGTTCTTTGCAAATGACATGATGGCTGAATAGTACTCCACATACACGTGTGCACCACATTTTCTTTCTCCATTCGTCTGTTGATGGACACTTAGGTCGCTTGCAGATCTTGGCTATTTTGAATAGTGCTGCAATAAACATGGAAAAGTAGATAGCTCTTTAATATACCGATTTCCTTTCTTTTGGGTATATGCCTAACAGTGGGAGTGCTGGAGCATATGACAGCTCTATTATATTTTTAGTTTTTGGAAGAACCTCCACATTATTTCCCACAGTGGTTATACTAGTTTACGTTCCCACCAACAGTGTACAAGGGTTCTCTTTTGCTACATCCTCGCCAGGATTCCTTATTGCCTGTCTTCTGGATAAAAGCCAGTTTATCTGGGGTGGGATGATATCTCGTAGGAGTTTTGATTTGCCTTCATCTGATGACGAATGATGTTGAGCACCTTTTGATATACCTGTTTGCCATTTGTATGTCTTCTTTTGAGAAATGACTATTCAGATCTTTTGCTCATTTTTAAGTTGGATTATTAGATATTTTTCCTATAGAGTTGTTTGAGATCCTTATATGTTTTGGTTACTAATCCTTTGTCAGATGAATAGTTTGAAAATATTTTCTCCCATTCTTGGATGGTCTCTTCACTTTGTTTATTGTTTCCTTTGCTGTGCAGAAGCTTTTTAACTTGATATGATCCCATTTATGCATTTTTACTTTGGTTGCCTCTGCTTGTGGGGTATTACTTAAAAAATCTTTGCCAGTCCAATATCTTAGAGAGTTTCCCCAATGTTTTCTTTCATAGTTTTCATAGTTTGAGGTCATAGATTTACATCTTTAATCCTTTTTGATTGGATTTTTATATGTGGTGAGAGATAGGGTCCAGTTTCATTCTTCTGCATAAGGATATCTAGTTTCCCCAGCACCATTTATTGAAGAGACTCTCCTTTGCCCTGTATGTGTTCTTGGTAACTTTGTTAGAAATAACTTCACTGTAGATATATGGATTTGTTTCTGGGTTCTCTATTCTGTTTCATTGGTCCGTGTGTCTGTTTTTATGCCACTACCGTGCTGTTTTGATTACTCTAGCTCTGTAGTATAATTTGAAGTCAGATAATGTGATTCCGCTAGTTTTGTTCTTTTTGCTCAGGGTAGCTTTATCTATTCTGGGTTTTTTGTGATTCCATATACATTTTAGGATTGTTTTTCTATTTCTGTGAAGAATGTCATTGGTGTTTTGATAGCAATTGCATTGAATTTGTAGATTGCTTTGGGTAGGATGGATATTTTAACAAAATTGATTCTTCCGGCTGGGCACGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGTCAGGTGGATCACTTGAGATCAGGAGTTCAAGACCAGCCTGATCAACATGGGGAAACCCCGCCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGCATATGCCTGTAATCCCAGCTACTCAGGAAAGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGTGGTGAGCTGAGATTGCACCATTGCACTCCAGCCTGGGCAACAGGAGCAAAACTCCATCTCAGAAAATAAAAATAAACATTGATTCTTCCAGTCCGTGAACATGGAATGCCTTTTCCATTTTTTGTGTCCTCTTCAATGTTTTGCATCAGTGCTTTATAGTTTTTATTGGAGAGATCTTTCACTTCTTCAGTTAAGTCTATTCCTAGGTATTTTATTTTATTTGTAGCTAATGAAAATGGGATTCGTTTCTTGATTTCTTTTTCAGATTATTTGCTGTTAGCACATAGAAGTGCTATTGTTTTTTGCATGTTGATTTTGTATCCTGCAACTTTACTGAATTTGTTCTTCAGTTCTAATAGTTTTTTGGTGGAGTCTTTAGGTTTTCCAAATATCAGACCACATGATGTGCAAACAAGGATAATTTGACTTCTTCTTTTCCAATTTTGATGCCCTTTATTTCCTTCTCCTGTCAGATTGCTCTAGCTAGGACTTGCAGTATTGTGTTGCATAACTGTAGTGAAAGTAGTCATCCTTGTCTTGTTCCAGATCTTAAAGAAAAGGCTTTCAGTTTTCCCCCATTCAGTATGTTACTAGCTGTGAGTTGTCATATATGGCTTTTGTTATATTGAGGTCTGTTCCTTGTATACTCAGTTTTTTTAGAGTTTTTATCATGAAGGGATGTTAAACTTATCAAATGCTTTTTCAGTATCAATTGAAATGGTGATATGGCTTTTGTCCTTTATTCTGTTGATACGATGTATTACATTGATTGATTTGTGTATGCATACCTGGAATACATTCCACTTGGTCATGAAGAATGATCTTTTTAATATACTGTTGAATGTGGTTTGCTAGTATTTCATTGATGATATTTGCCTCAATGTTCATCAGGGATATAGGCCTGTAGTTTTCTTTTTTTGATGTGTCTTTGCCTGATTTTGATATCAGGATATTCCTGGCTTTGTAAAATGAGTTTGGAAGTATTCCCTCCTCCTCTGTTTTTCAGAACAATTTGAATAGGACTGATATTTCTTGTTCTTTAAACGTTTAATTGTGGTAAATTATACATTACATACATTTTACTGTTTTAACCGCTTTTAAGTGTATACTCGGTGGCATTAGATACATTCACATTTTTGTGCAACCCAAAACTCTGTACCCATTAATCAGTAACTCCCCATTCCTCCCTACCTCTGGCCCCTGGTAACCATCATTCTACTTTTTGTTTCTATGAATTTGACCACTCTAGGTACCTCATTTAAGTAGAATCGTGTAATGTTTGTCTTTTTGATTCTGGCTTATTTCACTTATAATATTTCGAGGTTCATCCAGGTTGTAGTATGGGTCAGATTTTCATTCCTTTTAATGATGAATAATACTCATTATATGTATGTACCACATCTTGGTTATCCATTCCTCAGACAATGGACACTTGGGTTACTTCTACCTTTTGGATATTGGCAAATATTTCATTTCTCTTGGGTATATATTTATTTCTTTTGAGTATTTCTTTTGGGTATATATCCAGAAATAGAATTGTTGGATCATACGGTATTTCATTTTTTAATTTTTAGAGGAATCACCATAGTGTTTTCCATTGCAGGCGTGCCATTTTGTATTTCTAGAAGCAGTATACAGGGGCTTCAGTTTCTCTACCTCCTTGCCAAACTTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAATAGCCACCCTGATTGGTTTGAAGTGGTATCTCATTGTGGTTTGGATTTGCATTTTCCTAATGAGTACTGATATTGAGCATCTTTTCATGTGTTTATTGATCATTTGTATATTTTCTTTGAAGAATTGGCCATTGAAGTCTTGCCCATTTTTCTCCCCCACATAGCTTCTCATGGCTATTTTGCCCATTTTTGAGTGGGTTGACTGTTTTGTTGTTTTTGTCAAACTTTTTTGCATATTCTGGAAACTAATCTCTCTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAGCTCCGCCCGCTAGCTTCATGCCATTCTCCCGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGATAGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTGGTGATACACCCGCCTCGGCCTCCCAAAGTGCTGGAACTACAGGCTTGAGCCACCACGCCTGGCCTTCTGGAAACTAATCTCTTATCAGATATATGACTTGCAATATTTATTTCATTTCAGGGGTTGATTGCTTTCTCACTCTGATTGTGCCCTTTGATGCACAGATATTTTGAATTTTTCATGAGTCCAGTTTGTCAGTTCTTTCTATTCTATCTGTGCTTTGGCGTCATATCCATGAAAGCACTGTCAAACCCTATGTCATGAACATTATACCCAATGTTTTTTTCTAAGATATTTTTATGTTTTAGTTCTTGAGTTTAGAGTTTAGGTCTTTGATTCATTTTGAGTTAATTTTTGTATATAGTACAAATTAAGGGTCCAATTTTATATTATTTGAACATCCAGTTCCCCCAGCACTATTTGCTGAAAAGATGGACTTACTCTTTGAGACCCTGTCACCTGCCCACCCCAGTGGACACTAGCTGGTCCATCCAATTGCTGTCCTGGGGCCTTGTCATGCTACTCTTCCACTTTGGACCCAAGCCCACATCATTGCTCCCCTCTGGGATACTGACCCCACTATAAACTTCACTGGGGCTACAACCTTCCTACCCCTTGTGCCTCATGACCACCCCCTCCCTTGTCCCCACCATGCCCATGATGAGTCTTTTCTCAAGGCAGCTCGCCTTGCCTCCATCTCACCCTCACCTGTGCACCACAGCCACACTGGACATGGGTCCCTCTGAGCCTGAGTCCCTTCCCATTCCCACTGTCCCCTCTGGCAAGACCTTCCTTCCAACACTGCCTTCATGCTCCTCCCTTGCCCCTGCAGGGCAGCCTCTCCCCTTGGCCCCTATTCCCTTAGGGGGCTTGTGGCCACCCAGTCCTGGCACCTGACCTACAAGTTTGCCATCTTCATTCCCCCTTCTTCTGTTCATCAGCCCCCTCCTCTATCCTCCCACCCTCACAGTTTTCCTTGTATATGAAATCTTCGTTCTTGTCCTTTTGCCCATGCGCATTTCCTGCCTCCTCAGGGAGGTCGGGACAGCAGACCTGTGTGTTAAACATCAATGTGAAGTTATTTCCAGGAAGAAGTTTCACCTGTGATTTCCTCTTCCCCAG
Seq C2 exon
AGCCCCACAGTCTTCGTTACAACCTCATGGTGCTGTCCCAGGATGGATCTGTGCAGTCAGGGTTTCTCGCTGAGGGACATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAACGCAGGGCAAAGCCCCAGGGACAGTGGGCAGAAAATGTCCTGGGAGCTAAGACCTGGGACACAGAGACCGAGGACTTGACAGAGAATGGGCAAGACCTCAGGAGGACCCTGACTCATATCAAGGACCAGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204516:ENST00000252229:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.434
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NA
C2:
PF0012913=MHC_I=PU(47.8=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains