MmuINT0098790 @ mm10
Intron Retention
Gene
ENSMUSG00000054005 | Mill1
Description
MHC I like leukocyte 1 [Source:MGI Symbol;Acc:MGI:2179988]
Coordinates
chr7:18255886-18262702:+
Coord C1 exon
chr7:18255886-18255972
Coord A exon
chr7:18255973-18262438
Coord C2 exon
chr7:18262439-18262702
Length
6466 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCATGAACCTGTCTCCTCAGAAC
3' ss Score
7.3
Exon sequences
Seq C1 exon
AGGGTGACAACCAAAGACTGGTGGCTTCTGCTCCCTACCAAGATATTGAGATCACTCTGGAGAAGCCTAGAGTACAGGCGGTAGCAG
Seq A exon
GTAAGTATTTGCCATTTTAATTGACGCCATTTGGATTATACTTTCTGCACCAGAGGGCAGCTACAGAATTCTTGTTTTTTCTTGACAGTAGAGGAGCAGAGGTCAAGTCAGCAGAGGCAAGACTTGGTCTTGGGAGATATTAGGGTTGTTTTTATTATATAATAATAGCATTTACCTATCTCGATTGTATGTTACTTTGCTGTGTTATCTGGCCCACCTGCCTGAGTTCCTCTGAGGCCAGAAACTGCAGTCTCTGGTATTTAGCACCTCATCATAAAAAAGAGGGGAAATAAGCAAAAAATTAATTGCTAGGGCTTGTTTCTCTCTTGCACAGAAGTTTTGCCTCTCACTTACCAGGTGGGAGGGATGTTTGGAGCAATAAACATTTATTGAACTAAGGGAAGAGAGTCACTCACAAAAGGAAAAACTTTTATAAAAACAAATATGCATATGTATGTATAAGTCCAGTCAATATTTTTTCTTCTGTTTTTGCACCCACAATGAATCATTAGTTCCCCTTATGACCTTTGCTTAATCATTTTACAACCTCATGGAAGTGTTCTAAGTTGTAAATGCCTGTTTTCTATGTCAGAAGCATTATCTCACTACACTTGAAGACTGGTAGCGTTCTAATTGCAGTTTTCATATCAGAGATGGATTTAATAGCAATCCTATATTATAAAGAGTTTAATAATTACTAGTATACAGGTCTGTACCTTCCACCTAGGCAGACCATCAGCCTGTCTGCTCCTTTAAGGCTATGGAAAGACCCCATAGCCTGAAAGACTCTCAGGAGATCTACTACATCCAAGGCCATAGGTAAGGGACCTTCCCAAAAAGATCACAGCAGCTGGGAGCCCCAAGGAGCCCAGTGTACTCAGGACGCATCTCCAACCCCACCCTGGCCTAGGCCTTCCACCTGGGCAGACCATCAGAGTGTCTGCTCCTCTGAAGACCCCATAGTCTGAAAGCCTCCCAAGAGGTCTGATACAGCCAGGGCCACAGGCCTCCCAGGAGACCTAAAGCAACCCAGGGACACAGGAGGCAGGTTCCAGACAGAGACACCCAGGCCAGTTAACACCAGAGATAACCTGACATCGAGAGGCAAGAGTACAGCCATAAACAACAGAAGCCAATATACTTTGGCACCATCAGAACTCAGTTCTCCCACCACAGCAAGCCCAGGATACACCAACACACCTGAAAACAAGGATAATGACCTAAAATCCTATTTCTTGAAGATAATAGAGGTTTGGTTTGGTTTGGTTTGGTTTTGGTTTTTCGAGACAGGCCTTCTCTGTGTAGTCCTGGCTGTCCTGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTACCTCCCAAGTACTGGGATTAAAGGGTTGCACCACCACCACCTGGCAATAATAGAGTCTTTTAAGGAGAATATAAAAAACTCACTGAAAGAAAAACAGGAAAACATAAGTAAACAGGAAGAAGCCCTTAAAGAGGAAACAAATAAATCCCTTAAAGAAAAAGAGGAAAACACAATCAAACAGATAAAGGAATTGAACAAAGTGGTCCAAGACCTTAAAATGAAAGTATAAAGAATAAAGAAAACACAAATGGAGGCAACTGGAAATGGAAAACCTGAGAGGTCAGGAACTACAGATCATCAAGAAAGAGAATACAAGAGATAGAAGAGAGAATCTCAGGCATAGAACATACCATAGAAAATATTGACACAAAAGTCAAAGAAAATTCAAAACATTAAAAGCTCCCAACCCAAAACTTCCAGGAAATGCAGGACACAATGAAATGACCAAGCCTAAGAATAATAGGAATAGAAAAGAGCAAAGATTCCCAGCTCAAAGGACCTGAAAACATCTTCAACAAAATCATAGAAGAAAACTTCCCCAACATAAAGAAAGAGACGGTCATAAATGTACAAGAAGTCTACAGAACATTGGACCTCTTCTCATCACATAATAATCAAAACACTAAATGCACAGAACAAAGAAGAATATTAAAAGGTTTTTAAGAGAAAAAAGGTCAAGTAACATATAAAGGCAGACCTATCAGATGTTTTGCCTGAGTGGACAGTTAAGAAGAATATAACTATAACCCAACAGACAATTGACAACACTCTTTCATTGGTTCGCCTTGCAATTCTTTGCTGGGCTTCAATGAAGCTGGTCTTCACTGACCACACTCTTGCATTGGATTGTCTTGATCTTCACTTGTCATGACTTCATAGAAACACACCAAAAAACTTCTGGGGGTATTCCACAGACTAGTGCCTATCAGTAGAGCCTCATGTTTTTTTCTGGATTGAGCTGCTGCTACTGATTCATGTTTGGTGTCTGCCAAGTGGACTGGACTGCTGACAACTAAGATTGGCATCACCCCAAAAAACTATTTCTAAACAGGTCCACAACCCCCATTTCCTATTAACTTTTCTTTCCCCCTATCTCTGGTGGGTAGTGGGCTAAAGGGAGATTGAAGCATTAAAGAACCATAACATAAGTAAGTTTTTTTTTTTAAATCTAAACCTATAGTCTTTAGTGTACAGGCAAGTTTTATGTCAACTATACACGGCCAGAGTTATCCAAAAGGAGGAAACCGAAATTGAGAAAACACTTCCATAAGATGCATCTGTAAGGATATTTTCCTAACAAGTGATTGATTGGGAGGACCAACTCACTGTGGAATGGGTGGAGCCATTCCTGTGCTGATGGGACTGAGTTCTATAAGAAAACTGACTGAGCAAGCCATAGGGAACAACCTAGGAAGCAGTACCCCTTTAGGCTCTCTGCATCAACTCATGCCTCTGGGATCCTGCTACGGGTGAGTTGCTGTCCTGAATTCTCCAGTGATAAACAGTGATATGGAAGTGTAAGACAAATAAGCCCTTTCTTCTCCAACTTGCTTTTTTGGTCCCAATGGGAGAGGGGGAAACCCTAACTAAGACATTTAGACATCAAAAAATGAAACATCGAAGGAAAACGTGGTCTTTAGAATACAGCTGCCCCATGTTTTACTCCTTTGTTCCCTCTCTTCCTATTTTTAATCTTTAATTAATTTATTTATTTGCTGTTTTTATGGAGTCCTCTATTTATTATTTATTTATTTATTTACACTCCAGATTCTATTCCACACACACATATCCTGGTCCACTCTCTTTGAGTACATCATCACTGTCTTCGGACACACAAGAAGACGGCATCAGATTCCATTATGGATGGTTGTGAGCTGCCATGTGGTCCCTGGGCATTGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAACCACTGAGTCATCTCTCCAGCCCTGCTTCAACTCTTTTTAATCTCTATATTTATCATTGCCCTACTCACTCCGGATGATTTCTCCCATATCCATGCCCTGTATCTGGGTGCCACTTGTAACATACCTGCAGGAATAAGAATCCCAAACAGTGGGGTGATGAGTGTGAGGACCAGGGATGAGAAATAAAGAAAATGGAAGATAGATAATGTCAAAGCTATAACTGATGCCTTGTGCCAATCAAGTTTATTAAGAAGTACATCTTATTCATTATTTGCCCGGTAAAACAGCCAAGGTCAGCAGAGAGTTAAGTCAGACAATGTTGGAGAAAAGAGCATGGGATACGCCAGACACAGTTGCCTTAGGACTGAAAATCATGGCACAGAGAGAAGAGTGCAGTCCCCAGAAACTGCAACCTCAACTCCTCAAGGCACTGGCTCAACCTTGCTACATCCACTCCTGGACAAGGACACAGAGCCAAACTTCCCTTTGTCCTTCCATCAGGGCCTCTAAGGAAGAATTGGGTCCACCTGGCTCTTCACAGTATTATATTGTCCATGGCTATCTCCCACCATGGAGATAAAGGGGAGTTATGACAAGTGAGGTTGGAGAGGGATGTGCAGAGGGGAAAGCTCTAGGCAGGTGTTGGCAGGAGGCAAATGGGAGTTAAGGGGGCAGCCTAATTGTTATGAATCCCATGGTTCATGTTCTGCAAGAGTTTAGATAAATTTGTTTAGATATTTGGAAAACTAAACCAATCAATCTCAGAAACCAGTGAACCCCAGTTTCATTTGCTCTGTGGCAAATTTTTGAAGTCTTACATGACTCTCTCTGACAGTTTCTCACTCTGTGGAAACCCTAGAGTCTGCCATTCTCCTGCCTCAGCCACCCAAGGGCACATGCCACCACATCCACCGATAGGTTAATTTTTAAAATTTGTTAATGTATTTTTATGTATATAGATGTATTGTCTATATGGTAGGCTGTGTAACACATGTGAGCAGTACCTTCAGAGGACAAACCTACAGGCTAATGTCTTCGAAATTTGATGTTTTTTTCATCTGTATGGATGCATTATCTATGTGCTTAGTCTGTATGACACATGCATGCAATGCCCTCAGAGGCCAGAAGAGGGCATCAGACTCCCTGGAACTGGAATTTCCAGATGGTTGTGAGCCACCATGTGGGTGCTAGGAAACAAATATCATTTTTCTTCAAAAGCACTCAGTGTTCTTAATCACAGAGCTATTTCTCCAGCCCTTAGGTTAATTTCTTAAATGTTTTAGAGCTTGACTTTTTTACTCTTAATTCTTTTATTATTATTATTACATGCATGCTGGTGTTCTGCCTGCATTTATGTCTGTGTGAGGGTGTGAGATCCCCTAGAACTGGAGTTACAGACATCTGTAAGCTGCCATATGGGTGCTGAGAATTGAACCCAGATCTTCTGTTCTTAACCACTGAGCCATCTTTTCAGCCCCTTAGTTCTTTTTTTTTTTTAATTTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTCTCCTTCTTTACTTTTTGTTTATATGTTTGGGGGCATAGCTCATGCTCTTCATACCTACTGCCAAGGACCAATCTTGGCTCGGTCTGGGTTCCTGACAGAGGGGTCTTTAGGAGCAGGAAAAACAAACAACCAGAAATCAAATGTCAAATTGTGGGTTCAAGATCACAGCCTAGGTTCTGCTAAGATGACTTTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCAAGACAGCTTTCTTGCTATTCTTCTTGACACTAGTTTTCTGCCCTAGACAGCTCTCTCTGCTAGTAAAACTTTTAAAAGCTTTCTGGATAGCTCATGGGTTTTCTAACAAAAGTCAGAAAAGCTACTATAAAAACAATTCTGGCTCTTCCCAATCCTGTTAGAAAAATTCTAAAAGTCTCTCAACAAAACCAGAAAGCCAGAAAAATTCTAAAAGCTCTGCATTAGCTCTTCAGACAGCCTTCTCTGGATAGCTGCTAGAAAATATCCTAAAAGAGCTCTCTAAGTAATTCTGACCAAGTCAGAAATCCTGTTAGAAAAAACTCTTTAAGAGCTGTTTTCACTCTCCAGAGACCTCTAGACTGCTCAGCTCTTGCTAGAGAAAATTCTAAAAAAATAACTACCTGCTATCATCTCAAGCAGACCAAAAGCCCAGGTTTTTATTTATATATCAATTCAGTTATTTATTCCAGGTTCCCTTTTGATTATCCTAAGAATCAGTATCCCATGACCTCAGCTCCTTAATTCTTATTAAACAGCAAGCACACACTGTCTTTTATCCTTGCAAAAGAACTCAGAGATCTGCCTGCCTCTATTAAGCAAAGATGGTAAACTAGCTGGGTGAGACCCAGTCCTGAAATTACCATTTCTACAACACCTGGGCCTGGACTCAATGTGTCCCAGGCTGACCTTGAACTCAGGAATTTGCCTGCAAATGTTTCTGCCTGTCTTTGTATCTTTCTGATGAGCTGGCCCATAGTATAGCTGCCTCTGTTCCTTTAGACCTGTGAAGCTCCTTATACAATTCATATTGCATCCTTATATTTTTCATAGTTAAGAAATTATATATTTTTGAACTCATGCTTTTAGAGTTTTTTCCCCACAGCCTTAAGGGCTGTCCTGAAGGTCCCAGCCTTTACCGTTTTGCTGAGACATTATCTTCACCTTTACCTCATGAACTCATGCTGTCTCAGATTATCATGGAGTTATTAACCTTAACAGGGAGGACATTCCTTGGAGGAATGTGAAAATATATAATTATTATACAAACAATCCTTATGCCCAAGGCAGCTATTGACACTCATGGAGGCCCATGTCCTCTGGCCCTGTCTCAGGGGTAGGAACCATGTCATTCTGTTCCCACCAAGGCCATGCCAGACTCAGTAATCTACCTATAAGACACTGAGGCATAGAGTAGTCTGGTTTCAATCTTTCAAGGTAGAACTGATCATGGGAACCCATGAACCTGTCTCCTCAG
Seq C2 exon
AACCCCACACTCTGCGCTATGACCTCATGGCCTTGTCTCTGGAGGTGCCTGGGTTGCCCCAGTTCCTGACCCTGAGATACTTCGATGATGAGCCCTTCCTGCCCTATAAGAAAAACAGCAGCATAACAGACTCCCAGGAACCCAGGATCAAAGACCATCTGAGAGCTGAGACCTGGGGAAGAGAGACTGACGATCTTCAGGAAGAAGAGGAGCAACTCAAAGGGATGCTAGCTGAGATCACAGCCCAGAACGGCCAGAATACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054005:ENSMUST00000066780:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.348
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NA
C2:
PF0012913=MHC_I=PU(49.7=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types