RnoINT0092536 @ rn6
Intron Retention
Gene
ENSRNOG00000017699 | Mill1
Description
MHC I like leukocyte 1 [Source:RGD Symbol;Acc:1311714]
Coordinates
chr1:79641605-79649773:+
Coord C1 exon
chr1:79641605-79641697
Coord A exon
chr1:79641698-79649509
Coord C2 exon
chr1:79649510-79649773
Length
7812 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCATGAACCTGTCTCCTCAGGAC
3' ss Score
8.06
Exon sequences
Seq C1 exon
TGGGTGACTACCAAAGACGAGTGCCTTCTGCCCCCAACACAGACATCAGGAACACTCTAGAGAAGCCTAGAGTAACCACACAGGAGGTAGCAG
Seq A exon
GTAAGTCTCTGCCATTTCAATTGGTACCTGGGCCATTTGGATTATACTTCCTGTGCCAGAGGCCAGATCTAGCATTCTTGTTCTTTCTTGACGGTAGGGGAGGAGGAGGAGAGCTTTAGCAGGGGCAAAACTTGGTCTTGGGAGATATTATGGATGCTTTTATTATAATAGCATTTACCTATCTTGATACTTTGATGCGGTACCTACCCCACCTGTCTGAGTTCCTCTGAGGCCAGAAACTGCAGTCTTTGGTGTTTAGCACCTCATCATAAAACAGAGGGGAAGTAAGTAAATACTTATTGCTAGGGCTACAGCCAGGGCCACAGGCCCCCAAGGAGACCTGCAGCAACCCAGGGACACAGCAGGTAGGCTTCAGACAGACACCCAGGCCAGTTAACAACAGAGATAATCAGATGTGGAGAGGCAAAAGCAAGACCATAAATAACAGAAGCCAATATACTCTGGCACCATCAGAACCCAGTTCTCCCACCACAGCAAGCCCAGGATACACCAATGCACCTGAAAACCAGGATGCTAATATAAAATCCTATCTCATGAAGATAATAGAATCCTTTAAGGAGGATATAAATAACTCACTGAAAGAAATACAGGAAAACACAAGTAAACAGATGAAGGAATTGAACAAAGTAGTCCAAGACCCAAAAGTGGAAATAAAAGCAATAAAAAAAAACGCAAATAGAGGTAACCCTGGAAATGGAAAACCTAGGAAAGAGGTCAGGAGTCACAACAACAGAACACAAGAGATAGAAGAGAGAATCTCAGGCATAGAAGATACCTTAGACGAGACTGATACAAAGGTCAAAGAAAATTCAAAACATAAAACCTCCTAAGCCAAAACATCCAGGAAATTTAGGATGCAATGAAAAGACCAAACTTAAGAATAATAGGACTAGAAGAAAGCAAAGATTCCCAGATCAAAGGACCCAAAAATGTCTTCAGCAAAATCGTAGAAGAAAACTTTCCCAACCTAAAGAAAGAGATAGCTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACAGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCATATGGTGGCTCACAACCATCTGTAGTGGGATCTGATGCCCTCTCCTGGTGTGTCTGAAGATAGCAACAATGTACTCATAAACATAAAATAAGTAAATCTTTAGAAAAAGAGAGAGAGATGGCCATAATGTACAAGAAGCCTATAGAACACCAAGTAGATTGGACCTGAAAAGAAAATCTTCTCATCACATAATAATCAAAACACTAAATGCACAAAACAAAGAAAAATATTAAAAGATGTTAAAAGAAAAGATCAAGTAACATATAAAGGCAAACTTATCAGATGTTTTGCCAGAGTGGACAGTTGAGAGGATGCATGCTGTTTGAAAAGAGTGTAAGTGGCTTTGCTTCCAGCCATGGTGGCTGCAGAGCAACTTCCAGATAGCGAAGTGGCCTCAGCTTCAAGCTGAGGTGGCAGCAGTGCCAGGCAGGACCCCTCAGGACACCCACAGATCATCTTTTCCCCCACAACTTTGCCATGGCTGAGTGTCCTGTACCTGTATGCCCATGGCCAATGTGTATCCCTCCACCTTATGCTGACCTTGGCAAAGCTGCCAGAGATATTTTCAACAAAGGATTCAGCTTTGGGTTGGTAGAGCTGAATGTGAAAACAAAGTCATGCAGCAGTCTGGCTCATCTAATACAGACACTGGTAAAGTTAGTGGGATCCTGGAACAAGTACAAATGGTATGAGTATGGTCTGACTTTCACAGAGAAACAGAACACTGATAACACTTTGGGGACAGAGATTGCAACTGAAGACCAGATTTGTCAAGGTTTGAAACTGACCTTTGACACCACCTTTTCACTGAACACAGGAAAGAAAAGTGGTAAATATATATCCACTTATCAATGAGTGCATACCATGTGTGTTTTTCTGTGATTGAATAACCTCACTCACGATAATATTTTCCAGTTCCATCCATTTGCCTATGAATTTCATAAAGTCATCGTTTTTGATAGCTGAGTAGTATTCAATTGTGTAGATGTACCACATTTTTTTGGATCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGATATGAACATAGTGGAGCATGTGTCTTTGTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGAGGCATAGCTGGGTCCTCAGGTAGTTCAATGCTCGAATTGCCCTAGATGCACAGAACACATGAAACTCAAGAAGGATGACCAAAATACGGATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGGAGGGGATAGGGAGGCAAAGTTTAGAACAGAGACTGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCAAACTAGATAAGATGGATGAAGCAAAGAAGTGCAGGCCAACAGGAACAGGATGTAGATCTCTCCTGAGAGACACACCCAGAATACAGCAAATACATAGGCGAATGCCAGCAGCAAACCACGGAACTGAGAATGGGACCCCCGTTGAAGGAATCAGAGAAAGGACTGAAAGAGCTGAAGGGGCTTGAGACCCCATATGAACAACAATGCTAACCAACCAGAGCTTCCGGGGAATAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGTCTCCAATTGCATAAGTAGTAATGGATTAGCCTAGTAAGGGCACCAATGGAAGGGGAAGCCCTTGGTCCTGCCAAGGCTGGACCCCCAGTAAACGGGATTCTTGGGGGGAGGGCAGTAATGGGGGGAGGATTGGGAGGGGAACACACATAAAGAAGGGGAGGGCAAGGGATTAGGGGAATGTTGACATGGAAACCGGGAAAGGGAATAACATTTGAAATGTAAGTAAGAAATACCCAATTTAATAAATATGGAAAAAATTACAAAGAAAAAATTCTCACAAACAGAATTCAAGAACACATCAAAACTATCATCTGTCTTGATCAACTAAGCTTCATCCCAGGGATGCAGGGATGGTTCAATGCACGGAAATCCATCAATGTAATCCACAATATAAACTAAAAGTCAAGAAAAAAACACATGACCATCTCATTAGATGCGGAGAAAGCCTTTGACTAAATTCAATACCCCTGCATGTTAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATATCTAAACATAGTAAAAGCTATATACAACAAACCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAAGCAATCCCACTAAAATCAGGAAGTAGACCAGGCTGCCCATTCTCTCCCTACTTATTCAATATAGTACTTGAAGTCCTAGCCAGAGCAATCAGACAACAAAAGGAGATCAAGGGATACAGATTGGAAAGAGAGAAGTCAAAATATCACTATTTGCAGATGATATGATAGTATATTTAAGTGATCCCAAAAGTTCCACCAAAGAATTCCTAAGCCTGATAAACAACTTCAGCAAAGTGGCTAGGTATAAAATTAAATCAAACAAATCAGTAGCCTTCCTCTACTCAAAGGATAAACAGGCTGAGGAAGAAATTAAGGAAAAGACACCCTTCACAACAGTCGCAAGTAACATAAAATACCTTGGTATGACTCTAACCAAGCAAGTGAAAGATCTGTATGACAACAACTTCAAGCATCTGAAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAAAGACCTCCCATGCTCATGGATTGACAGGATTAATATAGTAAAAATGGCCATCTTGCCAAAAAGCAATCTACAGATTAAATGTAATCCCCATCAAAATTCCAACTCAATTCTTCCATAGAGTTAGAAAGAGCAATTTGCAAATTCATTCAGAATAACAAAAAACCTAGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGGTAGAGCGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCAAAAAAAAGAAGAGGAAAAAAAAAACCCAGGATAGGGAAAACTCCTCAACAATAAAAGGACTTCCAGGGGAATCATCATCCCTGACCTCAAGCACTATTACAGAGCAATAGTGATAAAAACTGTATGGTATTGGGACAGAGACAGGCAGGTAAATCAATGGAACCGAACTGAAGACCCAGAAATGGACCCACACACCTATGGTCACTTGATCTTTGACAAAGGAGCTAAAACTATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTAGTTCAATTGGTAGTCAGCATGTAGAAGAATGCAGATCGATCCATTCTTATTGCCCTGTACAAAGCTCAAGTCCAAGTGGATCAAGGACCTCCACATAAAACCAGATGCTAATCAAACTAATAGAAGAAAAAGTGGGGAAGCATCTTGAACACATGGGCACTGGGGAAAATTTCCTGAACAGAATACCAATGACTTATGCTCTAAGATCAAGACTGGACAAATGGGACCTCATAAAACTGCAAATCTTCTGTAAGGTAAAGGACACTGTTGTTAGGACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTACCAATCCTACATCTGATACAGGGGTAATATCCAAAATATACAAAGAACTCAAGAAGTTAAGACTCCAGAGAATCAAATAACCCTATTTAAAAATGGGATACGGAGCTGAACAAAGAATTCTCAACTGAGGAATATGAAATAGCCGAGAAGCACCTAAAGAAATATTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGCGACAGCAGATGCTGGGAAGGATATGCAGAAAGAGGAACACTCCTCCATTGTCTGTGGGTTTGCAAACTGGCACAACCACTCTGGAAGTCAGTATCAAGGTTTCTACTCCTGGGCATATACCCAAAAGATGCTCCAACTTATTAACAAGGACACATGGCTCCACTATGTTCATAGCAGCCTTATTTATTATAGCCAGTAGCTGGAAAGAACCCAGATGTCCTTCAACAGTGGAATGGATACAGAAAATGTGGGGGAATGTCAGGGTGGGGAGGCAGGAAAGGGTGGGTGGATGGGTGGGAGAACACCCTCATAGAAGAAGGGGGAGGAGGGATGGATGGGTGGTTGTTTAGTCCCTGGGAGCTCTGGTTGGTTGCTATTGTTGTTCTTATGGGGTTGTAAGCCCCTTCAGCTCCTTCAATCCTTTCTCTAACTCCTCCAATGGGAACCAGCCTTGCCAAGTCCACCCCTGGACAAGGCCACGGAACCTGAGTTCCCTCTGTCCTTCCTTCAGGGCCTCTGAGGAAGTCTTGGGTTATCTGGCTTCTCACAGTATTATAGTGGTCATGGCTGTCTCCCACCATGGAGGTAAAGGAATTATGCAAGTGAGGGTATCACTGTTGGGGAGGGGTGTGCAGAGGTTAAGGACCTAGGCAGGTGTTGGCAGGGAGGCAAATAGAAGTTACGGGGCAGCCTAATTGTTATGAATCCCATGGTCCATGTTCTGCTAGAGTTTAGATAAGATCATTTAGGTATCTGGAAGACTAAACCAATTGATCTCAGAGACCAGTGAAGCCCAGTTTAGTTTGCTCAGTGGCAAATTTTTTGAAATCTTACATGACTCTCTCTGACAGTTTCTCACTCTGTGGGAACCCTAGAGCCCTGTCATCCTCCTGCCTCAGCCTCTCAAGTGCTCATGCCTCTACATCCACCTACAGTTTTGTTTTTTTAATTTGTTAATGTATTTTATGTGTATACATTATTGTCTATATGGTAGACTGTGTAACACATGTGAGCAGCACCTTCAGAGGCCAGACCTACAGGTTAATTTCTTCGAAATTGATAATGTTTTTTCATCTGTATGGATGTATTATCTACATGCTAGTCTGTATAACAGATGCATGCAATACCCTCATAGGCCAGAAGAGGGCATCAGACCCCCCTGGAACTGGAATTATAGATGGCTGTGAGTCACCATGTGGGTGGTAGCAATCAAATGCCATTTCTCTTCGAAAGCTGTCAAAAACCACTGAGCTATTTCTCCAGCCCTTGGGTTAATTTCTTAAATGTTTTAGAGACCTTGACTTTTTTATTCTTAATTCTTTTCTTTTTATTTCATGCATGTTGGTGTTCTGCCTGCATGTATGTCTGTGTGAGGGTGGGAGATCCCCTAGAACTGGAGTTACAGACATGTGTGAGCTACCATAACAGTGCTGGGAATTGAACCTGGGTCTTCTGGAAAAGCAGCTAGTGTTCTTATCCACCGAGTCATCTTTTCAACCCCTCAATTCTTTTTTTAATTCAATGATTTCTTTTCTTTCTTTCTTAATTTTGGTGTTTATCTTTAATATCTTTTTACTTCTTGTTTATGTATTTGGGGGCACAGCTCATACTCTTCATGTCTACTCCCAAGGACCAACCTTGGCTAGGTCTATGTTCCTGAGTGAGGGGTGTTTGGGAGCAGGAAAACAAACAACCAGAAGTCAAATTGTGGGTTCAAGCTGGCAGCCTAGGTTCTGCTGACATGACTTCTCAAACTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTCCCTCTTTCTCTCTCTCTCTCCTCTGCTCTATACAGCTTTTTCTTGCTATTCTAAAAGCTCTTTGGTTGACACGATTATCTTTCTGCTCTAGCCAGCTCTCTCTGCTAATAAAACTTCTAAAAGCTCTCTGTAACAGCTCATGGGTTTTCTGATCGAAGTCAGAAAAGCTGCTATTTAAAAAAAAATTCTCGGATCTTCCAAATCCTATTAGAAAAATTCTCAAAGTCTCTCTATCAAAATCAGAAAGTCAGAAAAATTCTAAAAGGGCTGTGCCTGCTCTTCAGACAGCCTTCTCTGCATAGCTGCTAGCAAACATTCTAAAAGAGCTGTGTCAGCCCTCTAAAGGAATTCTGACCAAGTCAGAAATCCTGTTAGAAAAAATTCCTGAAGAGCTGTTTTCACTCTCCAGAGATCTCTAGACTGCTCAGCTCTTGCTAGAGAAAATTCTAAAAAGAGAGCTAACTGCTATCACTTTCTGCCAGCTCATCTCATACAGACCAAATGCCCCAGTTTTTTATTTATATATCAATTCAGGTTCCCTTTTGATTATCCTAAGAATCAGCATCCCACAACCCCAGATCCTTAATTCGTAGTGAACAGCAAGCACACATTTTCTTTTAACATTGCAAAAGAATTCAGAGATCGGCCTGCCTCTCTTACACACAGATGGTGAACTAGCTGGACCCAGTCCTGAAATTACAATTTCTACCACACCTGGGCCTGGACTCAGTGTGTCCCAGGCTGACCTTGAACTCAGGAATCTGCCTGTCTTTGTATCTTTCTGACAAGCTGGCTCGTGGTGCAGCTGCCTCTGTTCCTTTAGATCTGTGAAGCTCCTATGAATTCATATTGCATCTTTACATTTTTGCATAGTTAAGAAATTATATTATTTTTGAACTCATGCTTTTAGAGTTCTTTTCCACAGGGCTATTGTGAAGGTCCCAATGTATACCATTTTGCTGAGACATTAGCTACACCTTCCCCTCCTGTGAAAAACAGATACATTAATATACAACCAGGCTTTATGCCCCAAGCAGCTATTGATGCTTGTGGACTCAGTAATCTACCTGTGAGACACTGAGGCATGGAGTAGTCTGGTTTTAATCCTTCAAGGTAGAATTGACCATGGGAACCCATGAACCTGTCTCCTCAG
Seq C2 exon
GACCCCACACTCTGCGCTATGACCTCATGGCCTTGTCTCTGAAGTTGCCTGAGTTGCCCCAGGTCCTGATCTGGAGATACTTTGATGATGAGCCCTTCCTACATTATAATGAAAGCAGCAACAGAACAGACTCCTGGGAACCTAGGATCAAGAGACATTGGAGAGCTATGACTTGGGCAAGAGAGACTGAGGATCTGCAGGAAATGGTGGAGCAACTCAAAAGGATGCTAGCTGAGGTCACAGGCCAGAAAGGCCAAGATAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017699:ENSRNOT00000035286:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NA
C2:
PF0012913=MHC_I=PU(50.0=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]