RnoINT0092520 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8928544-8933166:+
Coord C1 exon
chr3:8928544-8928591
Coord A exon
chr3:8928592-8932930
Coord C2 exon
chr3:8932931-8933166
Length
4339 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTGGTCATCTGTCTTGTCAGCTT
3' ss Score
5.92
Exon sequences
Seq C1 exon
TGCCGCCTGGAAAGGAGACGCTGCCCTTCCCCAGCGATGGGATCCCGG
Seq A exon
GTGAGTGACGGCCACTGCGCGGGCGAGCAGCGCAGCAGGGCTAGGAGCGAGGCTTGCAGAGCATGGAACCCGGCCCTCGTAGGGGTCCGCAACCCAGCCGGTCCGTGAAAGTGTCCAAGGTGGGATGAGTGAATCCCCCTGGACCAGGCGGCACGAGAGGATTCATGGCTCCGGGGGTGGAACGAGAAGGGAGCTGGGTCAAAGAAGAGACTCCCGGGCCTGGAACGCTGAAGGCATCTAAGCAGGGTCTCTGGTACTGGTACTCCCCAGCCTGGAAGGAGCAGGTGTGCCGGCTGTGGGCAGCGCTGTATGTGGACTGCCGTCAAGGATGTCCTAAGGAGGTCGGGGCCAAAGAGGAAGGTCCCTGAATAGGCTCCGCGAGGAGCAGATACTGAAGCTTGGAATATTGCTGACGTTCACTGTGGGGTTGCCCAATGCCAGGCTGCGTGGGATCCCACAGAGATGTTCTGGGATGGGAAAAACAGGACATGAGGCAAAGGGTGGTGTAGGGCTGTCTGGTTCTGGGAACACAACTAGGTCAAGGTTGGACGAAGAGAATGCTTAGGCCAATTAGTAGGGTTGTCTTGCACAAGAGTGGAGGGCCTGGATTGGAAGGCTGAGATATCAGGCCTAAGGTGCCAGGGTGGAGGAGCATACAACCTCCCTGCTCAAGAATGTGGAGCAGAATTAGTGGTCAGCATTAGAATCGAGAGACAGGTAGGATATGGTGTTGAGCTTGACCCTTCCTTTCTGTGAAGTGACCTTTCTCTTGGGCACAGACAAGACTAACTGGACTCACCTGCGAACAGAAGATAGGCCTCCACCCGCACCTCCTCCTGCCTGGGTCCTAGATTAGACTCTGCCCTCTAATTCCATGTGGTCTTCACAGATGTTCAAGGCCCCCAGGTTTGATACAAGCAAGCAGCAGGCAATGGCTAGGGTGCTCCAGCACAGCCTCTGTGGGTGCCTCGTCTCTTAAAGCCCCTGTATTCATATCCTTGTGGTAAATGATGTTTACCTTGAGGGCTCCGAGAAGGACTCCACTCAGAGTCCTCACAGAGAGCTAGTGCGCTGGCCTGTTGAAATGCACGGGAAAGTATAGCTCCTGCTATCTGATGTCCTTGCCTTTCGCTCGAGGCCCTGCCAGGCCAGAGGCTTACAAGAGGATATGCATACCACAGTCCACTTCACAACCTCTAGGCAAAAATCTCTCCTGCCCTTGACCTTGTGGCAATTTCTTTAGCCCTTGAACCTCACTCTGCTTGCCAGCCTCTTGCCCTCCCCCTCCCCCCACAGACTTAGGACCAGCCTGGTAGGGCTGTGTGCCTTTCTCCACTTACCAACGATAATCTGTTTCTTGTTCATCTCTTGTGCTGGCCTAGTGACTTTTGGCCACCATCCCAGAGAGACTAGGTCTGTCCTGGCCTGTGTGTTCCTTCCTCCGAAGATCCCAGAAAGCCTCCTTGAACTTGAACAAGACCCCTGCAGGGTCTTGGGGTCTCAGTTACATGTGATCAAACCTCTGATCTGGCCTTAGGTCTTGGGGGGTCTTGGGCTATCTTCTCCCTCTGTGCCTCTGTCTGCTTCTGCTGTGTTAAACAGAGTCCAGTAGACCTTGAAGTACCCTCTCTTCACCCATTAGCAACCAAGTTATTTTGGACTCCGGGCTTAGGCTGGACAAAATTCAGTTTCTTTATGAGAAGGTGGAGAAAGGCAGGGAGAAACAAATGCCCATGTAGCTGTCCTGGTTCGTAGCAATAAACTCAACACTTGAGACAAAAAGCAAGAGAAGTATCTAGAATTCAAGGCCAGCATGTGCTACAGTATGTGACTCTGCCTCAAAAAGAAATATAAGTCAAAACAAAGAACAAAAAAGCCACCACCACAAGATCAGCATAGACATTTAGGCCACAGGAAGTGAAGCACTCCAGGCTTCACTTCACTGTGAAGAGGATGTCATGGCTCTCAGTCTGGAGCCTGAGATCTTTATTTAGAAAACAGCCAGTGTTTTTAAAAAGCCGGAGAAAGTGCAGAGGGCTCTGAGTTAGAGGGTGACCTATTTCTCTCCAGTCTCGGGGTTCTTTCTGCAGCTAACGGGCCATGCATGCCTCCCTCTGCTCCCAGGTTTATAGAGGCGTCTGTGAGACATCTGGCGGCTTGCCTGCCTGTGGGGGCAGAGGGCTGGGGCCTGGTATTCCTGATGCTTCTGTTCATTCAGCCACTGGAGGGACTGTGTCCCATGCCGCCCCCACACCCCACTGCTACATGCTAGACAAGTGCTTTGAAAAATTTTGAGACAGGGTCTGCCTAAATTGCTCTGTCATTCTTTGAGCTTCTTATCCTCCAGCCCCAGTGTCCTGAGCAGCTGGGATCACAAGCCTGAAGTGCCCTAAGGTGCCCAACCTCTGAGGACACTCTTGTTTCTATCTCTGTGTGCTGACACCTGCACCTTTCTCTAAGAAATCCCCGTGGATAAGCGTCTTGCATGTGTGTATGTGTCCATTTATTGTGTGTGCCCGGTGCCTTCACAGCTCGGAAGAGGGCATCAGATCCCTTTCAGCTGGAGTTACCCACACTTGCAAGCCAGCATTTGGGTGCTAGGGATTGAATCTGGGCCTTCTGGAAGAATAGCCAGTGCTTTTCACTGCCGGGCCAACTCTTTAAGGCCCAAAGTTTTAAGTATTTTATGTGTGTGGACGATTTGTCTACATGTCTGTCTGTACACTATATCTGTGTCCGGTGACCATGGAGGCTAGACCAGAAGACAGCAACGAATTCCCTGGAACCAGAATCGCATGGTTGCGAGCCACCGTGTGACAGTAGGAATCAAATGTGGGTCTTCTGGGAGAGCATCTGTTTATCTTAACCACCCAGCAAACCCCTGCAGTCCTGACCTTTTAAAACAGTTTTTTACTGGAAAGATGGCTCAGCGTTTAAGCATGCTTGCTTCCGTTCCCGAGGACCTGAGTTCGGTCCTCAACACCTGCATCAAGTAGTTTACAACTTACGACACAGATCCTTAAAGAGAAATTACATAGGAGGGCCGGAGAGATGGCTCAGCAGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAGCCGTATGTAGTGGTATCCAGTGCCCTCTTCTGGTGTGTCTTACAGTGTACTTATATATAATAAATAAATAAATCTTTAAGAAAGGAAAAGAAATAAACACGTATATGAAGGTGATCTATTGAAAACCCTAGATAAGGGGATAGACAGAATGTCAACTGGCCATCTCTGGTCACAAAATTAAGCTTTGAGAATATGGATTTAGGGGCTGGAGAGATGGCTTAGTTGTTAAGAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAGCCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGGAGAATATGGATTTGGTTGCTAATTGAGGTTTGGCCAAAGGGAACCCCAGTCACTCATGCTGTTACCAAGACTGTATTCCGTTCTCCACAAACTGATGGCAAGGCCTCATTGCTGAAGACATCACCTACCCAACTCAGCATGGAGAAGTTGAGCTGGGGCCTTCACGCCTACATTCTAGCATCTAAAAAGTTCATAACTTCCTGTAATGCCAGGTGCAGGGTATCCCAAGCCGCCTTCTGACCTCTGCAAGCATCTGAACGTATGGCGTATACACATACATAAGTAAAGTGTATTATTTGTGTATATGCGTGCAGGAGCACCTGCCACAGGCACATGTGGAAGCCAGAGAACGGCTTTTGGGGGTCAGTTCTCTCCTTCCATATCTAGTTTCATTTCTGTTGCTGTGATAAAACACCTCAGTAAAAGCAACTTAGGAGAGGAGGGTTTTATTTTGTCTCACAGTCCCAAGTGACAGTCCATCATTATGAGGAAGTCACAATGACATGAGCTGATCTCATGACAGCCGTTCATGTTACATTTAGTCAGGAGGCAGAGAGCAAAGAACGCGTGTATGCTTTTACACAGTACATGGACCTAGCCTAGGGAATGGTGCCACCTACTGTGGATGGACCTTCTCACCTTTATTAACAGTTCATTCCTCGTGGACACCCTCAGAGTCCCATCACATTCAACCTTGGATCCTGGGGAACTCGGTTGTCAGGCTTGCTCAGCAGGTTCTTTTATGTGCTTAGCTAACTCACTGCCCCAAAGCTTGTTAGCAGGACTGGGTATCGGATGTAGGGAGGTGAGCGCTCTACCACTCAGACTCTGCATGTACCTTACGGTGTCTCTCTTGGTCATCTGTCTTGTCAG
Seq C2 exon
CTTTGTGGAATGACCTGTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTGCCCAGGACCCAGCCAGAGACCAGCTGAAGACGTTCTCCTCGGAAGCTCTCACCCCAGGAGGTCCCGTCCCGGGTGCTGGGCCTACCATGGCATTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATACCAGTGTTCCTGTACACGACTTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102654=DUF2217=PU(0.4=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]