RnoINT0095715 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214788238-214788859:+
Coord C1 exon
chr1:214788238-214788364
Coord A exon
chr1:214788365-214788603
Coord C2 exon
chr1:214788604-214788859
Length
239 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GTCCCCTGTTCTTCCTATAGACA
3' ss Score
9.9
Exon sequences
Seq C1 exon
AACTGCTTGTTTGACACGTGCAACTGTGAGAATAGCGAGGACTGCATGTGTGCCGCCCTGTCCTCCTACGTGCGTGCCTGTGCTGCCAAAGGCGTGCTGCTCAGTGGCTGGAGGGGCAAAGCCTGCT
Seq A exon
GTGAGTACGCTGTGGGCCACCGAGGCTTTGTCACAGGGTATACATCCCCACGGGGATCCTGCCACCCTGGCACAGGGGCCACTTAGGACCCTCGGCAGCAGTAGCTATTAGTCCTCTGTCCCATGCCTACTGTGCAGCATCCTGTTGTGTCAACAAGGGTGTTGGTTTGAGGCAGGGAAGAGCAAGGGTTGGGCCAGTTCCCCAGTCACTGATCTCTCTGTCCCCTGTTCTTCCTATAG
Seq C2 exon
ACAAGTACATGAACAACTGCCCCCAAACCAAGGAGTACTCCTACTCAGTGAGTACTTGCCAGCCTACGTGCCGCTCTCTAAGTGAGGTTGACGTCACCTGCAGCATCCCCTTTGTGCCTGTGGATGGTTGCACCTGCCCTGAAGGTACCTTCCTGAATGACAAGGACCACTGTGTCCCAGTGGAGGAGTGCCCCTGCTACTTCCATGGAACCGTGGTGGCTTCCGGAGAGGTTGTTATGGACAACGGTGTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(51.2=100)
A:
NA
C2:
PF087426=C8=PD(8.5=8.1),PF0182612=TIL=WD(100=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCGAGGACTGCATGTGTG
R:
GTTCCATGGAAGTAGCAGGGG
Band lengths:
307-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]