RnoINT0095716 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214788604-214789691:+
Coord C1 exon
chr1:214788604-214788859
Coord A exon
chr1:214788860-214789635
Coord C2 exon
chr1:214789636-214789691
Length
776 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
GCTGCTACTGTCTCTTGTAGCTC
3' ss Score
8.03
Exon sequences
Seq C1 exon
ACAAGTACATGAACAACTGCCCCCAAACCAAGGAGTACTCCTACTCAGTGAGTACTTGCCAGCCTACGTGCCGCTCTCTAAGTGAGGTTGACGTCACCTGCAGCATCCCCTTTGTGCCTGTGGATGGTTGCACCTGCCCTGAAGGTACCTTCCTGAATGACAAGGACCACTGTGTCCCAGTGGAGGAGTGCCCCTGCTACTTCCATGGAACCGTGGTGGCTTCCGGAGAGGTTGTTATGGACAACGGTGTGGTGTG
Seq A exon
GTAAGGAGACTGTTCTCACACCCTTCCCCATCCTCACAGGTCTGTGTCAGCAAGGTCTCTAGCTGCTGGTCTTTCTATACCTGAAAGTTTGTATGGCCTCCTCACTGAGGGTTTCAGGACATACTTGGGGCATGTTGGGTGTTGGGGGCACCTTTCAGACGCCCCTGAGAAACAGCAGGGGGGTTGTTCTGAGGGTCCTGTGATATCGCGTGCAGAAGCACTCACAAGCAGTTCTCAGCCGAGGTCCTACTCCCCCCTTGACCTCAAAGGCAGTTCCTTTACAACTCATGGTATAATCGAGCTTTCTGGGACTATACCAAAAACCCAGGACAAGACAGAAAGAGAGGTTCGTCTTGGCTCACAGTTTTGAATGCTCAGCCTATAAGGATATGACTGAGTGGTCCAATGACTTTGGGCCTGTGGTAAGGCAGCGCATCATGGTAGGAGAACATGTAGAACATAACTCATTGCATAGCAAGGAAGAGAGGATGGGCAAGTTAGGGTTAAAGCCCCACTGTCCCCTTTAATGACCTAACTTCTTACCATTTGGCCCTACGTAAGGGCACTACCGTCTCAGGCTGGTGGCTGAACCTTGAGTGTGTGAGAATGTGGGGTCCAGGGTCTTCCCATGGGCCCCTAACAGCAGGCACCCTCTTGGCCTTGGGAGGAGACAAGGAGTTTCATGAAGGCCCAGACCTTGGTGGGGTATGGGAAGTGCTGGGGTTAAGATGTAGGAGACACTAGGCCCAGAGCAGGGCTGCTACTGTCTCTTGTAG
Seq C2 exon
CTCGTGTACAAATGGGAAGTTGACCTGCCTGGGAGCCCTGATGCAGAGAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(8.5=8.1),PF0182612=TIL=WD(100=67.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACATGAACAACTGCCCCC
R:
CTTTGTTTCTCTGCATCAGGGC
Band lengths:
310-1086
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]