RnoINT0095721 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214790755-214791096:+
Coord C1 exon
chr1:214790755-214790893
Coord A exon
chr1:214790894-214790982
Coord C2 exon
chr1:214790983-214791096
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
CTCATTTCCTCCTTTCTTAGGAC
3' ss Score
10.39
Exon sequences
Seq C1 exon
CACCTGCCGGAACCGCCGGTGGGAATGCACCAACCAGCCCTGCATGGGTGCCTGTGTAGCCTATGGGGACGGCCACTTTGTTACCTTTGATGGTGAACGTTACATCTTTGAAGGCAACTGCGAGTATACCTTGGCTCAA
Seq A exon
GTATGTAGTCCCCTCCCAGTGGATCACCCTTCTCTGTCCTTCTGGTTATTTCTGGGCTGTAACCAGAGCCTCATTTCCTCCTTTCTTAG
Seq C2 exon
GACTACTGCAGAGGCAACACCAGTACTGATGGGACCTTCCGTATTGTCACTGAGAATGTCCCCTGTGGGACCACAGGAACCACCTGCTCCAAGGCCATCAAGATCTTTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.5=59.6)
A:
NA
C2:
PF0009420=VWD=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGCCACTTTGTTACCTT
R:
ATCTTGATGGCCTTGGAGCAG
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]