RnoINT0095727 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214795654-214795968:+
Coord C1 exon
chr1:214795654-214795798
Coord A exon
chr1:214795799-214795924
Coord C2 exon
chr1:214795925-214795968
Length
126 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
AGCCCCTGTCTTCCCTCCAGTCT
3' ss Score
8.1
Exon sequences
Seq C1 exon
GCTGCTACCCACAGTGTCCACCCAGCCAGCCCTTCTTCAATGAAGACCAGATGAAGTGTGTGGCCCAGTGTGGCTGCTATGATGATGACGGAAACTATCATGACATTGGCACACAGGTCCCTACAGCTGAGAACTGCCAGAGTTG
Seq A exon
GTGAGAAAGGACCCAGGGAAGGGAGAGGGTAGAGATCCATGGTGGTTGGGAGAGGACAGGGAGGACGAAAGTGTGTCGTAGTTAGGGATTGCCCACAGATTCTCAGAGCCCCTGTCTTCCCTCCAG
Seq C2 exon
TCTCTGCACCCCTGGTGGCCTCCAGTGTGCTTACAACCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTACCCACAGTGTCCACC
R:
TGTAAGGTTGTAAGCACACTGGA
Band lengths:
187-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]