BtaINT0096553 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51394190-51394469:-
Coord C1 exon
chr29:51394322-51394469
Coord A exon
chr29:51394234-51394321
Coord C2 exon
chr29:51394190-51394233
Length
88 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTTCTCTCTCCCTCCCCCAGTGA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GCTGCTACCCGAAGTGCCCGTCCAGCAAGCCATTCTTCAACGAGGACCAGATGGAGTGTGTGGCCCAGTGCAGTGGCTGCTACGACGGAGATGGGAACTACTACGATGCTGGCACGAGGGTTCCCAGCACGGAGAACTGTCAGAGCTG
Seq A exon
GTGAGCCAGTGCGGGTGCTGGGCGGGGCCAGGTGGGCACACTGAGGCCTGTGCCCTGCTGGCTTAGCTCTTCTCTCTCCCTCCCCCAG
Seq C2 exon
TGACTGCACCTCCAGCGGCCTCCAGTGCACTCACAGCCCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCAGCAAGCCATTCTTCA
R:
GCTGTGAGTGCACTGGAGG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]