GgaINT0054961 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:15867283-15869003:-
Coord C1 exon
chr5:15868862-15869003
Coord A exon
chr5:15867327-15868861
Coord C2 exon
chr5:15867283-15867326
Length
1535 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TTTTTTTTTCTCTTTTCCAGTGA
3' ss Score
11.89
Exon sequences
Seq C1 exon
GCTGTTATCCACACTGTCCAAAGAATAAGCCCTATTTTGATGAAGAAACCATGGCTTGTGTTTCTAATTGTGGTTGCTATGAGAATGGAAAACATTACAAGCCAGGAATGCAGATGCCTTCAAAGCAGAACTGCCAAACATG
Seq A exon
GTAGGATTAACGAAGATTTTTACATGTCGAGCCTAATGTTGAAGAACTTAATTCATCATGCATTTGGTTTTTTGTTTGCTAGCAAAAACTAGGCCAACTAGGCTGCTGAATTATGTCTGATTTTCTTCTGCTCCCAGAAATGTAGAAGATGACATGATTAAACATTTTACTTTAGGGAGATTAATATATTACTCAATCTGCATTCTTATTACAAACATTATTAAGTAAAAACAAATTAAAATAATAATTTTGTAAATAATCTGAGGACTTATATTAAGATATCCCTAAAGTAATTATGTAGAATTACTTAGAAGTTAGTAGATAACAGTTCTTCATAGTTTTGAACTCATTTCAGTTATTTGCAACTGTCAGCAAATATTCCTACATATTCCATTAGAATTGATGAATTTAGCTATACTTGTTGGGAAAGTCCTGTCAAGCTTTCTATCAAATAGCACAAAGTTAGCAGAACCAGTTGTGAAGCAGTTAACACTGTCCTGAGACATCCTGGGGAGGGACTCTCCAAGACTGCAGTGATAGGACAAGGGGTAATGGTTTAAAGCTAAAATAGGGTAGGTTTAGATTACATGTTGGAAGAAATTCTTCACTATGAGAGTGGGGAGACACTGGAACAAGTTGCCCAGAGAAGTTGTGGATACTCCATTCCTGAAAGTATTCAAGGCCAGGTTTAATGGGGCTTTGAGCAACCTCGTCTAGTGAAAATATCCCTACCCATGACAGGGGTTTCAACTAGATGGTCCTTAAGGTCCCTTCCAACCGAAATCACTCTACAATTTTATGACTCTATGATCTTTAAAATAGCTATAAATGAATACCGCAAGCAGTGCAGCCAGAGTGGCAAAGAGTCTAGTACAAAGCCCATCTGACTATTTACACAACTTTCACATTACACTTTGAAGATCATAGATAGCTTTGATTGCCTCACCTATGTCATCAACAGTACTAAATGTAAATTGTTAAACATATATCCATATTTGCTTAAGTTTATGCAGTGTACATATGCCCTTAGTCAGATAAATGTAAATAAATATATCAGGATTCAATTCTTAGCAGATAATAGATAAATTCTCTTTAAAAACTACATTTCCTGAAGTGGTTTGTCAGAAATCTGACGAAAATTCTCTGTGTGGACAATGTCAACATCTGTAATGCAATGATTGTTTCTCAACTGATATTTTTACTGCACTTTCCCTTCGAAAAATGTGTGCCTATCAAGGAGACAAGAACATTCCTAATCACACCTCCCCATATCTTTGCCTTGTCTCTAAAAGCAGCAGTGAGGAAAACTTGCATTTAGTATAATGTCATATGAGAGTTGATCTCCTTGCCACAAAATCGAGTGATCCTATCTAACCTGAATTTGTAAGGCAGAACTGAATAGCTGACTGAGAGAAGTTAGTGTCCTTCTACACTGCAACATGCAATGAACAGCAGACAACAAAAAAAGAAAGAATAAAATGATACTACTAACCAATACATTCAGATTCATCATCTTTTTTTTTTCTCTTTTCCAG
Seq C2 exon
TGAATGCACAAACCATGGCAAAATATGCAAATACGATGAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTATCCACACTGTCCAA
R:
CGTGTTCATCGTATTTGCATATTTTG
Band lengths:
186-1721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]