HsaINT1023953 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1180354-1181182:+
Coord C1 exon
chr11:1180354-1180516
Coord A exon
chr11:1180517-1181138
Coord C2 exon
chr11:1181139-1181182
Length
622 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCTTCTTCCTTGTCTCCAGCCT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GCTGCTACCCCAAGTGCCCACCAGAGGCTCCCATCTTTGATGAGGACAAGATGCAGTGTGTGGCCACCTGCCCAACCCCGCCTCTGCCACCACGGTGCCACGTCCATGGGAAGTCCTACCGGCCAGGTGCAGTGGTGCCCTCGGACAAGAACTGCCAGTCCTG
Seq A exon
GTGAGTCCTTTGGGGGGAGGAATATGGAGCCTGCAGCATGCAGGGGAATTTGACCACGGCCTGGGCTTTGGGTGGGGCTGGGAGCGGCAGGGCTGGGGACCTCCCCGTTACTGGAGTTGAAGCTTGGGTCCTGTCCTGGCCCAGGCATCTGTGACATCAGCTTCTCAGGGACCAGCACCCCCATGTCCTGAGTCCCAGAGGCGGGACTGGGTGTAGGGCTCCTCTGGGCAGAAAACCAGCACAACCTCTGGGGAGCAGGCTCGAGGGGCTCAGGGGGCGGCAGGGGGAAGCTGGGCCGAGATGGAGCCCTAGGGTCCCCACCGGAAGGATGCCCATTAAAATCACCCCTGGAAAGTAATGGCTCCACTCTGGCACCCACCTCCCCTGACCCCCGACTGGAGGGGCCCCACGAGGGAGGGACCTTGGGCTGACGCTGGAGAGACAACTGCTGGGACCCAGGTGGGGCCGGCCTCCTGTCCCCCAGTCTGGGGGTGCAATGCAGTTCCCAGGGAACTCCACCCCTGTCGGAGCTGCTCCCTGCCCGCCGTTGGTAGCATGGGATGCCCGTGGAAGGCACACGGCCGCCCCCACGCATCGGCCTGCCCTTCTTCCTTGTCTCCAG
Seq C2 exon
CCTTTGTACGGAGCGCGGCGTGGAGTGCACCTACAAAGCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTACCCCAAGTGCCCA
R:
CCTCAGCTTTGTAGGTGCACT
Band lengths:
206-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains