RnoINT0095728 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214795925-214796243:+
Coord C1 exon
chr1:214795925-214795968
Coord A exon
chr1:214795969-214796045
Coord C2 exon
chr1:214796046-214796243
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCAGTGCATGTAATCCCCAGCCT
3' ss Score
2.69
Exon sequences
Seq C1 exon
TCTCTGCACCCCTGGTGGCCTCCAGTGTGCTTACAACCTTACAG
Seq A exon
GTAAGGAAAGGCTGTGGGTTTGGGGTTGAAGAAAGACTGGAGGGTGAGTAAGCTAAGCCAGTGCATGTAATCCCCAG
Seq C2 exon
CCTGCACATGCATCTATGAGGGCCGTACCTACAACTACAATGATGTTGTCTACAACACCACTGATGGCCTCGGTGCCTGCTTAGTAGCCATCTGCAAAGACAACGGGACTATAAAACGCACGACTGAAGAGTGCCCTGAAGTCCCGTCTACCACACCATTCATATTCACCACCACTCTGACACCCCTTACCACAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAGTGTGCTTACAACC
R:
TGTGGTAGACGGGACTTCAGG
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]