RnoINT0095752 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214809837-214810720:+
Coord C1 exon
chr1:214809837-214809945
Coord A exon
chr1:214809946-214810530
Coord C2 exon
chr1:214810531-214810720
Length
585 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ACACCCTTCTGTGTCCACAGGTA
3' ss Score
12.33
Exon sequences
Seq C1 exon
ACTCAAGTACCTGTCAAGTGCACGTCAACCCAACCGTCTTGAGGCACGAGGGCTGTGAGACAGAGGTCAACATCACCTTCTGCGAGGGTTCCTGCTCTGGAAAGTCCAA
Seq A exon
GTGAGTGGGTGTCCTACTTCCCCTGAGAGGTCAGCAGAACTAGGTGCTTGCTATCTGTCACCTTGGGTCTCACAGAGACTGTCCCCTGCTCAGGACCAGGAGGTCACACATAGCTCTCTGTGTAAAGCATATGGTTCACCTCCCACCCAAGCCAGGGGCAAACCTGGCTTAGCTGCACAAAATAAGGTTTTGGCTGGGGACTCATGGTCAGGAATCTGAATGTGTCTAGGGGGTCGGGCAGCATCTGTGAGCCCTAGATAGCCCCAGGCTGTGGTCAGCTGTGAAGAGGGAGTGTCCAGGAAGGTCGAGAGTCTGTGGTTAGATAGGGCAGGAGAAATGATCAGAGGCTCACTTTGGGGCTTAGGGTGGCTGTCCAGAGGGACATCTGAACAGGCTCGGCAGAATGGAAAGGGAACGGAATCACAGAAGGCTATGAAAGACAGAGTAGGATTTAAAGAGAGTCCAGGAGGGGTAAGGCTTTGTGTTTAAGAAAGTAGACATGGTGGACATCAGACAGCTGTCAGGAGCCCACAGAGGACCATGCATCATTCTACTGTTAAGAGGAACACCCTTCTGTGTCCACAG
Seq C2 exon
GTACTCCATGGAGGCCCGGGCCATAGAGCATCAGTGCAGCTGCTGTCAGGAGACCAAGGTCCATGATGTAGCTGCAACATTACAGTGTCCCGATGGTACAGTCATCCAGCACACCTATACCCACATCGACGAGTGCAAATGTGCCCCGGCCTGCAGCTCCCTGCCTATGACTTCCATGACTATTTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTACCTGTCAAGTGCACG
R:
GGAAATAGTCATGGAAGTCATAGGCA
Band lengths:
294-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]