RnoINT0095782 @ rn6
Intron Retention
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214626680-214627045:-
Coord C1 exon
chr1:214626907-214627045
Coord A exon
chr1:214626710-214626906
Coord C2 exon
chr1:214626680-214626709
Length
197 bp
Sequences
Splice sites
5' ss Seq
ACGAGCTGA
5' ss Score
-13.56
3' ss Seq
TCTGCTCCCAGGAAGGGCAGGGT
3' ss Score
-8.6
Exon sequences
Seq C1 exon
GGTTGTTAGCCTGCCCTACACCAGCAATGGCCTCCAGATCACACCATACGGCCAGAGCGTGCAGCTGGTGGCCAAGCAGCTGGAGCTGGAGCTAGTCATCATGTGGGGTCCAGACGCCCACCTTATGGTGAGATTCACG
Seq A exon
AGCTGACAGACAGCATTCAGGAGGGGCCCTCCTCGAAGTGAGTTCCAGGAGCCCCGACTAGCGGGACAGCTGGACAGTTGACTGCTGGCCAGCAACCAAGAGGACCTGAGCTTAGATAGCAGCTCAGTTTCCCTATTTGAAAAGGAGAAGGATCCAGTCAGGGAAGAAACCTCACGCTCTGCTCCCAGGAAGGGCAG
Seq C2 exon
GGTGGTGAGGTGGGAGTGCCTGGAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817:ENSRNOT00000087497:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(37.4=100)
A:
NA
C2:
PF0009420=VWD=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTAGCCTGCCCTACACC
R:
CAAGGTTCCAGGCACTCCCA
Band lengths:
168-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]