RnoINT0095797 @ rn6
Intron Retention
Gene
ENSRNOG00000037188 | Mug1
Description
murinoglobulin 1 [Source:RGD Symbol;Acc:621366]
Coordinates
chr4:154682401-154683566:+
Coord C1 exon
chr4:154682401-154682485
Coord A exon
chr4:154682486-154683457
Coord C2 exon
chr4:154683458-154683566
Length
972 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GTGACTTTATCTTGTGACAGATA
3' ss Score
7.18
Exon sequences
Seq C1 exon
TGCTTCCCAGATTTGGTGTCGATGTGAAGGTCCCAAACGCCATCTCTGTGTACGATGAAATAATCAATGTGACTGCCTGTGCGAT
Seq A exon
GTGAGTTACCTGCTTCTGTCCTTCTTTCCTTAAGAATGAACTCAGACACAGAATATGCCTGGAATAATGCCTCATTTTAGAATATGTAGAGATGCTACACTTGTGTCCTTCCCCGACTAGAACATTTCCCCTGTGGTGTTCATGTGTCCTTTACTGCTCTGCATCAATCGCTGTGCAATCATTCGCTGCATGCATTACTGATATCAATGGATAAAATCAATTGTTTGAGGCAGTAAAGACTTCCTGCCTTTGGAGACAGGAAGGGACCTAATAAGATCCACTGACCCATGTGAAGAGAACATAAGCACTAAGTCGAGGCATCTCCCTGCCTTCTTATGGTCTGACAGAAAGAGCAGAGATACAAGAGCTCCCTGTTTGCCTCCACCCCTAACCACTGCCACCTACGTTTAAACTTTAGACATCTCAGCATTCTGCTTGAATTTCTGGACCTGATAAATGAGGACCTTACACTACAACAAATAAAAGTACTATTTAAGTCTAGAACCATAAAGAAGAAATTTGCAGTATGTGCCTAAATCTAACAGAAGACACACCGCAGCCTACATTGTCTTTTCATTCCAATTAATGAGCTCAAAAACTAAACCATAGGACAAAGGCCAAGGACTGAGGAGGTGCGTTAGGTTCTGAGTTATTTCCCATCCTCCCCACTCATTTCAGCCCCATCATCTAGTAGCTGAGGATCCTGGTTTGGTTACTTAATCTTTTCAAACCACAAAAAGGAGGAAACCAGGTCTTCCTAGGTTCTTAATAGAGCTAAGAACCTATGCTTTTTGTTTATTAATTAATTTATTTATTTACATTGCAAATTTTTAGCATACGCACTTAGAAGGTGTCAGGAGGCAATGGTGGTCTGTGTTTGTGCCCATTATGAAACCATACAGTCTCAGTGAGAAGACAGTGGGTCTCCACTTTAGAAAGACCCTTGGTCTCTGTGACTTTATCTTGTGACAG
Seq C2 exon
ATATACCTATGGGAAGCCTGTCCCAGGACATGTAAAGATAAGTCTTTGCCATGGAAATCCTTCCTTTAGCTCTGAGACAAAGTCTGCATGCAAAGAAGAGGACTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037188:ENSRNOT00000019969:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCAGATTTGGTGTCG
R:
GGAGTCCTCTTCTTTGCATGCA
Band lengths:
191-1163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]