GgaINT0103740 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79377285-79378262:-
Coord C1 exon
chr1:79378178-79378262
Coord A exon
chr1:79377409-79378177
Coord C2 exon
chr1:79377285-79377408
Length
769 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TTAACACTTTGTGATTATAGTTA
3' ss Score
3.12
Exon sequences
Seq C1 exon
TGCTGCCCAAGTATGAGGTCCTGGTGAAGCTGCCTAAGATGATTACTATTGAGGATAAGGAACTTCCAGTGTCCGTCTGTGGTCT
Seq A exon
GTGAGTCACAGAGCTGGAGTAAATCTCTCTCATACATCTTTCAGTCCTCCTTTCTGCTGAGCACAGAATAATAATAATAATTACAAAAAACAAAAAAACAAAAAACAAACAAAAAAAAACAACAACAACAACAAAAAAAACCCAAAACCCTCACCAAAAAATGGGAAGGTTTTTCATACTTTTTAAAGAGATCTCATGCAGGCAGGCTTGTTCCACCCTGTCTGTTCTGAGGCTGCTACTTGACCTTAACTGTTCCTTACAGGATGATGTCAAACCAATCAGCGGTTCTCTCTTCTTAGTTTATTCTACGTTTTCTCTTTCTGTCCTTACATCTCATCAGCTTCTCTACCATTCCTGAACCTTCCAGTACTTGGGGGTGTCAGATCTGACATCACTTAAGCAGGTTGTGTAAAACCAGTGTTGTAGTTTGTAACTTATGCTTTGTTCTGCTTGAGCCCTGTTCACTTGTCTACTTCTTCACTAAGCCCTTAACTGTTTGTGATACAAGGATACTCCCAACTGACATAATATTATGCAATATTTTTCTGCATTGTTATGAAGACCTCCCACCTGGATCAGATTCTTATGTAAGAGTCTTAGCATTATAATGATGGAAACATAATCACTAGAATGATTAGAGTATTAGATTGGACTTTAAGAAGAAATACTACTAAGTAATTCACATAAGTTCTTAAGGACGTATGTCTGAATGTGACTCTGACTGCTTGTCTCATCGTCTAGTATATTGTTTAACACTTTGTGATTATAG
Seq C2 exon
TTACACGTATGGGAAACCAGTCCCTGGTTTGGTGAGTGTCCAAGTGTGCCGGAAATTTTCTCATTCTGCTTCACATTGTTATGGAGAAGAAGGAGAAGCTGTGTGTGAAGAATTCACTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCCAAGTATGAGGTCC
R:
ATTCTTCACACACAGCTTCTCCT
Band lengths:
198-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]