HsaINT0135692 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9349608-9353044:-
Coord C1 exon
chr12:9352960-9353044
Coord A exon
chr12:9349720-9352959
Coord C2 exon
chr12:9349608-9349719
Length
3240 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
ATTTATTTCTCATGTACCAGATA
3' ss Score
5.86
Exon sequences
Seq C1 exon
TGCTTCCCAAGTTTGAGGTCAAAGTTCAGGTGCCAAAGATAATCAGTATCATGGATGAAAAAGTGAACATAACAGTCTGTGGAGA
Seq A exon
GTGAGTTACATTGTTTTTATCTAAAATTTTATATTTTGCCTCAATTTTGAGGGATTATGTAGGTACAAAATTATAAATTTACTTTGCCTCAGCACTTTTGTAATATTACTCCTTTGACTTCTCTTTATTTAACGACTTACTATTAAAATTTTCAAATACATAAAAGAATAGAAACACACTTAATTATGATTTAACAATAAACATCTTTCCGTATTGTTTCATCATATATTTTGCTTTAACATCTTAGGATAAATCACAAAGATCATGATATTTTTCTGTACATGCAGTAGTATGTACCTCTAAAATACAGAGACATTGTCCACTTCTGCGACAACACGATCACTTAACAAAATTGGAAGTAATTTTCCAAAACTAATTGCAAGTTTACAGTCAAGTATCTTCAATTGTCCTAAAAATGGTCTCATAAAGCTGGGTGTTCGCACATTGGTTTTGGTTATTATGACTCCTAAGTACCTTTTCTTTTTCCAAACTCTCTACAACGGAAATTTTCAATCACGTGCCAAAGTTAACAGAGAAGTAAAACACAATTTCATGTACCTATCACCTATTTTTAAAATTGTAAAATTTGCCAGGTTCTTTTTGTCCCATTTCCTCCTCTACAGTAGTTTTTTTGCTCTAATATTTTAAAGCAAGCCATAGGAATCTATAAATATCTTAGAGGTTTAAAAGTCTATAACCTCCTTTTTTTAATGACATTTCGCTGAAGATCATCAGTTGGCCTCTAGAAGTCTTGCTTGCAGAATCTGCCTGTTTGTTTTCTCATGGAACATTGAATTAATTATGCCTAATCTTTCCTCTGGGCAATTTTAAGAGGATACATTGAATGTTTTACATTGATCTTTTTGATAGAACAATTGTTCAATAACCAGAAATAGTGCAATGGTAGAACAAATTGTTTAATAACCTGAAATAATCTCTCCCCCAGAAATTTCCACTCCAGGAAATTTCACTTTCTCCTTTTCTTCATATGTATACCATAAATACTAATCCTGTCATTGAGGAAGGAGGATGCGCTGATACGATGGACTAAAAATGTGACAGAGAAACCTAAAGATCACAGGTCACAATTACTGGGCAAAAGCCAATGATTAGGATTTTATAGAAGTGACTTAAACATAATATAAATGATCCAGTGACTGATGTCATGATTATGAAGGGTACTAGACTCAGAATCGGCAGTGATGAGTGTGCCTCCCCTATCAGAACTTACTGTTTTCACTAGGCATTCTGCTGCTTCTCTGTGCCTCCATCTCTTAAGCAGTAGACAGAGGGCATGAACCTTACCTATGATGTTCCTTTCCACTGTTGCCCTCTGTGATTACAGATACCTCTTACAGTTCCTTTTAACCTGAAGAAGCAAAACTGATAGCCTACAAACAAACAGTCCCAGAGGGAGCACGCAGGGTAAAGGAATATGCCAGCCTAAATATTATATACCAGAAACACCAAAACGCCTAGATCTCTGCCTCATTTCAGCCTCAGAGCAATGGCCAAGGAGTTATGTGTCCAAATTAATAGTGCCGTAGTGCAGATATCTATATGTTGGAGAAGGGCTTCAGAATAAGCTGCTTTGATTCTATCTTTTTATTTGAAGTAATTTCAGAGCCATTTGCAAATAGGAAAGAAAACCAATGTCCAAAACAAAATTATTGTGTATTATTCTGTTACCCATTATCTAATCAGAGAAAGGACTAATATAACATGTGCACACACACATAACCCCACTAATTATTTTGTATTTACATGCCTCATGTGTTCCTAGGCTTCTTTTTCTCCCTCTCTCTCCCTTCTCTTCTCTGTGCATGTGTGTCAGTGCACGTGTGCGTGTGTCTGTGCATTTTGTGTTAGATTTGCTTAGTTATTATGTACTTATTTTTATTCAATTCATCATCTACATTTGCTCACTTGGTATACAGAATAAGCTTTGATATTATTAAAACAAAATAAAGAAGAATGATAGAAAATAAGTAGGTTAAAAGGAAGAAACATTTTTTTAGTAGACAGAGTCTCTCACCCAGGCTGGAGTGCAGTGGAGCAATCTTAGCTCACTGTAGCCTCAAACTCCTGGGCTTATGTGAATCTCCTGCCTAAACCTCCTTAAGTAGCTAGGACTACAGGTGCATGTCACCATACCCAGCTAATCTTTTTAAAAAGCTTGTAGAGATTGGGTCCTGCTATGTTACCCATGCTAGTTGGGAACTTTTGGCCTCAAGCAATCCTTCTTGGCTTCCCAAAGTGTTGGGGTTGCAGGCATGAGCCAAAGCACCTGGCCAAAGGAAAAACATATATATATATATGTTTGCATATATATATGACTGCACTGTACCACCACATTCTCTTTGGGATTAAATATATATATAATATATATTAATATATAATATATAAATATGTAATATAAATATAATATATAGATAACTTATATAATATATAATATAAATATATATAATTTATATATTATTAATATTTATATTATATATTATATATAATTAATATTATATATTATATATTGTATAATATATAATTATATATATTATGTATTGTATAATATATAATTATATATATTATGTATTGTATAATATATAATTATATATATTATGTATTGTATAATATATAATTATATATATTATGTATTGTATAATATATAATTATATATATTATGTATTGTATAATATATATAATAATTTTATATTATATTATATAATATAATATATAATATAATATATAAATATATAATATATATTATATTTATATATTATATTATGTCATATATTATATATTACATTATATATTATTAATCAGTACTCTAATAATTAATAATTATTTTCAACATTATACATAATATATTTATATATAATATATTATATTATTATATATTATATTATTATATATTATTAAGCAGTACTCCAATAATTAATAATTATTTTAATTAAACATTAAAATATAATAATTATAATATTATATATTAAATATATAAAAATATTTATATAAATATATATATTCAATCCCAAAGAGAATGTGGTGGTACAGTGCAGTCAAGTTTCAAAGGTTTTAATGGCTAATATTTTTGAGGGAGACATTTTCCAGACAGCTTTCTACTTGGTGGGCACCCAGATGATAAAGATGTGTAGGCAACTCTAAAGAGGGACAGTTCTGTGGAGGAGTGGTAGTGGAAAATGCAAACAGCCATTCTCAATTCCTGATTTATTTCTCATGTACCAG
Seq C2 exon
ATACACTTATGGGAAGCCTGTCCCAGGACTTGCAACTGTGAGCCTGTGTAGAAAATTATCTCGTGTTCTTAATTGTGACAAGCAGGAGGTCTGTGAGGAATTCAGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(21.1=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)