GgaINT0103685 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79340503-79341514:+
Coord C1 exon
chr1:79340503-79340587
Coord A exon
chr1:79340588-79341390
Coord C2 exon
chr1:79341391-79341514
Length
803 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCTGTCCTCTCCGCTTATAGATA
3' ss Score
10.8
Exon sequences
Seq C1 exon
TGCTTCCAAAATTTGAAGTAACAGTGAAAATGCCCAAGGTTATCACCATTCTTGATGAGAAGCTGAAGGTGACAGTTTGTGGTCT
Seq A exon
GTGAGTATCATTCTTCTTTCAATACTTCTTTGGTTCAGGTTTTATTTTAGCATTACTGAAGTCTAGTTGGGAAGCTTTGTTACATTTCTCAATCGTTCTTGAAGTCCCAGGACCAATAAGGCTATACAAACTATTAGCGAAAAGGCTTAACAAAATTACTGCTGGGGTCACTTTGGAGTATGTAGAACTACACTGTTCTGTTTTTTGGGGGGAGTATTTTTAAAGTCTTTTATATAAAAGTCATAGAGGATTTAAGATCAGCTGCAATACTAGAGAAGTCTTCTATTTAGTTCAGCTGAGAATGGCCTTTTTATCTGTGGCTTCTACATGAAAAAACATGTCATGTTTCCTCTGGGCCACATCATTTGATTCTACATGGCGTGTTCTACATGCATCTTGCAGGAAAAGACATGGAATGGGATGAAAAATGAGCTGAAAAACCCATTGTACATACGTACATAAACCAGTTGCATCAGAATTAGGTGGTAGGGTTATACTTGCATCATGTTCTCTAAGTCTAGGTGTACTCTCAACGAATAAGCATAGTGGTAAATGACTTTTGCAAAGTTATGTCTTATTCCCAGGAATTCAATCAGAATTATAAGATTCAGTGCTGTACTCATTGCCAACTTTGATCCTAAAATGTTATCACATTTCTTGCTTGTCTTTTACTTGGTACCCTACTGTATCTTGGAGACAGTTCTAGGGAAAAGTTCTGGCTCCACCTGTGGTGAACTAACCATTTTCCTCCATCTCTCTTACCCTGATAATAGCTCTGTTTTTTCTGTCCTCTCCGCTTATAG
Seq C2 exon
ATACACATTTGGCAAGCCTGTTCCTGGCCATGTGAGCTTCCGTGTCTGCAGGAAATTTGAACACCCAGCCACTGCTTGCTATGGTGAAGAGGCTAAGGCAGTATGCGATGAATTCTCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCAAAATTTGAAGTAACAGTG
R:
CTGTCCGGAGAATTCATCGCA
Band lengths:
209-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]