MmuINT0041416 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:121973873-121975053:+
Coord C1 exon
chr6:121973873-121973957
Coord A exon
chr6:121973958-121974965
Coord C2 exon
chr6:121974966-121975053
Length
1008 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
GTGAATTTATCTTGTCACAGATA
3' ss Score
6.75
Exon sequences
Seq C1 exon
TGCTTCCCAGATTTAATGTCGACCTGAAGGTCCCAAATGCCATCTCTGTGAATGATGAAGTGCTCCAAGTGACTGTATGTGGGAA
Seq A exon
GTGAGTTGCTGGCTTCTGTACTTCTATCCTTAAGAAAGTACTCAGACACAGAAAATCTCTGGGATGATGCCTCTTTGTTGAATATGTAGAAAATGCTACAGTTGTGTCCTTTTCCACTAGAATGTTTCCCCTGTGGTGCTTGTTTGTGTTCCTTCCTGCCCTGTATAGATTAATTTGCAATCATTCACTGCATACATTGCTGATATCTATAGATAAAAATCAATCTTATAAGGAAATAAAGAGGTCCTGCCTTTAGAGACAGGAAGGGACCTAATACAATCCACTCACAATGTGAAGAGAACACAGGCCCTAAGTCAAGGCATCTTACTGGCCTCTTATGGGATGACAGAAAGAACAGAGAAAAAAAGAGCTCCTAATCTACCTCCAGCTCAAACTACTGCAGGTCAAATTTAACCTTTAGATATCTCAGTCTTCTACTTGATTTTCTGTACCTGATAAATGAAGACATTTACTACAACAACTAAAATTTCTATTGAAGTCTAGAACCATATGAGATGCTTGCAATATGTGCCTGAATCAAACAGAAGACAAAGACCTTAGCTCACCATTCCTTGTCCTTACAATGGGCATACTCAAAAACTAAAATGGTAGAACAAAGGCAAAGTATTGAGGAGGTTTGTTTACAGCAGCTCTGAGTGATTCTCATGCCCCCATTTGTCTAAGCCTCATCATTTAGTAGCTGAGAATGCTGGTTTGCTTACTTAATATTTTTCAGAACCACAAAAGGGTGAAAACCATATCTTCCCTAGGTTCTTAATATGTCTAATTTTTACTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTAATTTACATCCCAAATTCTTAACATATACGGTTAGAAGTTGTCAGGAGTTAATAAAAATGGGACATGTTTGTTGTCGTTATGAAACTAGAGTCAGTGAGAAGACAGTGCATCTCTCCTTTTGAAAGATGCTTGGTTACTGTGAATTTATCTTGTCACAG
Seq C2 exon
ATATACCTATGGGAAGCCTGTTCCAGGACAGGTGAAGATAAGTATCTGCCATGAGACTGAAGCTGGATGCAAAGAAGTCAATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cpamd8:NM_008646:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: