RnoINT0096285 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53732098-53733101:+
Coord C1 exon
chr10:53732098-53732294
Coord A exon
chr10:53732295-53732917
Coord C2 exon
chr10:53732918-53733101
Length
623 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
AACTTTATGTAACCATCAAGGAA
3' ss Score
2.14
Exon sequences
Seq C1 exon
GCCAAGAACGCGCTAGCCCACGCCCTGCAGTCCTCCCGCCATGACTGTGACCTGCTTCGGGAACAGTACGAGGAGGAGCAGGAATCTAAGGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGTGAGGTGGCCCAGTGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTATGTGCACATTTGGAGAAAAAAATGTGCAGAAAACTTTACATATCCATGCCACGTCATTGCAGACTAGCTTTTGTCTTCTAGACTATCATAATAATCCCCAAACAAAATGAACATATCCCCGAGCTGCTGACTCCAAATCTGGTTAAGGGAACAAAGAGTAACAAATAATTGCTAATTCCAGAGCCTGCTGCTCTTTGTCAAATACCCGAAGCTCATTGCGGCCTCTGCACTGGCTTGCTCCTCTGTACACGACAGCCCCTGTCTGTCTCCCACTAATTCACTCTGTGTTCTTAGCAAGACCTTCCCTAAATAGCTTGAGTTCTCACTCAGGGATCACCAAATCCTATTTCTCTTCACTGCGTTCATATCTGAAGGGTGTTATTAAGCAATTTCAGGCTTGACTGTCGTTGGTTTCTCTCACTTGTCTGTGAGCTTCATGAAGCCGGTGACATTTGTCTTGTTCCCTGCTGTGTCTTCACGTCTGCTTCTAAGAGGACCCTAGAGAATCGTGTTGACTGATCGAATAGCATCAATATGAAGTTTTCGATACTCTCCAATGTGGTGATAGTTCATGTTTTTAATAAGGCTTCTTCTTCCTAAAACTTTATGTAACCATCAAG
Seq C2 exon
GAAAAAGCTGGCTCAGCGTCTGCAGGCGGCTGAGGAGCACGTAGAAGCCGTGAACGCCAAGTGTGCTTCCCTGGAGAAGACTAAGCAGCGGTTGCAGAACGAGGTGGAGGACCTCATGCTGGACGTAGAGAGGACCAACGCTGCCTGTGCTGCCCTGGACAAGAAGCAGAGAAACTTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.210
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.1=100),PF045827=Reo_sigmaC=PU(40.0=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTCCCGCCATGACT
R:
TCTCTGCTTCTTGTCCAGGGC
Band lengths:
342-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]